View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16828_high_17 (Length: 201)
Name: NF16828_high_17
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 31908409 - 31908578
Alignment:
| Q |
19 |
aaaattcgaagataatttggatgaagcacttttagaagatgaatggaaccacatggagattatgtatcaaggtgaaaacaatgccctagtccccattgaa |
118 |
Q |
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| T |
31908409 |
aaaattcgaagataatttggatgaagcacttttagaagatgaatggaaccatgtggagattatgtatcaaggtgaaaacaatgccctagtccccattgaa |
31908508 |
T |
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| Q |
119 |
agtggaatccatgtattcaaacagaagtgtatcacagatgatattcgattcaccgacccttgaagaataa |
188 |
Q |
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| T |
31908509 |
agtggaatccatgtattcaaacagaagtgtatcacagatgatattcgattcacggacccttgaagaataa |
31908578 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 35986896 - 35986956
Alignment:
| Q |
20 |
aaattcgaagataatttggatgaagcacttttagaagatgaatggaaccacatggagatta |
80 |
Q |
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| T |
35986896 |
aaattcaaagctaatttggatgaagaacttgtagaaaatgaatggaaccacgttgagatta |
35986956 |
T |
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