View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16828_high_6 (Length: 526)
Name: NF16828_high_6
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 31908409 - 31908909
Alignment:
| Q |
19 |
aaaattcgaagataatttggatgaagcacttttagaagatgaatggaaccacatggagattatgtatcaaggtgaaaacaatgccctagtccccattgaa |
118 |
Q |
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| T |
31908409 |
aaaattcgaagataatttggatgaagcacttttagaagatgaatggaaccatgtggagattatgtatcaaggtgaaaacaatgccctagtccccattgaa |
31908508 |
T |
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| Q |
119 |
agtggaatccatgtattcaaacagaagtgtatcacagatgatattcgattcaccgacccttgaagaataagaaatcagaaatctccaaggtaaattatct |
218 |
Q |
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| T |
31908509 |
agtggaatccatgtattcaaacagaagtgtatcacagatgatattcgattcacggacccttgaagaataagaaatcagaaatctccaaggtaaattatct |
31908608 |
T |
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| Q |
219 |
tgttgtgtgttttcactttaactagttttagtttccctatcctatatggatttttaatgttattgattatggttggttgtgttgtatcaaatatatggaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31908609 |
tgttgtgtgttttcactttaactagttttagtttccctatcatatatg-atttttaatgttattgattatggttggttgtgttgtatcaaatatatggaa |
31908707 |
T |
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| Q |
319 |
ttgatgcattttctggagctgttgttattgcttaaagtagagcaccaaggggtcatgtgctgcttctggtagatatttttgtacccaatattgtttatat |
418 |
Q |
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| T |
31908708 |
ttgatgcattttctggagctgttgttattgcttaaagtagagcaccaaggggtcatgtgctgcttctggtagatatttttgtaaccaatattgtttatat |
31908807 |
T |
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| Q |
419 |
tctatgtccttctattgtttatgaataatgttaaaagaaaaaacgtttttgagcatgtttatcaaaatgagattcaaattgtgaatcaaagacctatgtt |
518 |
Q |
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| T |
31908808 |
tctatgtccctctattgtttatgaataatgttaaaagaaaaaacgtttttgagcatgtttatcaaaatgagattcaaattgtgaatcaaagacctatttt |
31908907 |
T |
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| Q |
519 |
ac |
520 |
Q |
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| T |
31908908 |
ac |
31908909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 351
Target Start/End: Original strand, 31900006 - 31900081
Alignment:
| Q |
276 |
tgttattgattatggttggttgtgttgtatcaaatatatggaattgatgcattttctggagctgttgttattgctt |
351 |
Q |
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| T |
31900006 |
tgttattgattatggttggttgtgttgtgttagatatatggaattgatgcatcttctggagctgctgttatggctt |
31900081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 35986896 - 35986956
Alignment:
| Q |
20 |
aaattcgaagataatttggatgaagcacttttagaagatgaatggaaccacatggagatta |
80 |
Q |
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| T |
35986896 |
aaattcaaagctaatttggatgaagaacttgtagaaaatgaatggaaccacgttgagatta |
35986956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 515
Target Start/End: Original strand, 19525205 - 19525249
Alignment:
| Q |
471 |
gcatgtttatcaaaatgagattcaaattgtgaatcaaagacctat |
515 |
Q |
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| T |
19525205 |
gcatggttatcaaattgagattcaaattgtgcatcaaagacctat |
19525249 |
T |
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