View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16828_low_10 (Length: 283)
Name: NF16828_low_10
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 4903659 - 4903392
Alignment:
| Q |
1 |
caatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttga |
100 |
Q |
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| T |
4903659 |
caatgaagaaaaatatgtgttgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttga |
4903560 |
T |
|
| Q |
101 |
tctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaaccctcctcgggag |
198 |
Q |
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| T |
4903559 |
tctttgttgggattctatcgtgaagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcgagaaaaccttcctcgggag |
4903460 |
T |
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| Q |
199 |
accatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaag |
266 |
Q |
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| T |
4903459 |
accatcaagatcttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaag |
4903392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
| Q |
82 |
tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac |
149 |
Q |
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| T |
1557054 |
tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac |
1556987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 22153898 - 22154135
Alignment:
| Q |
1 |
caatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttga |
100 |
Q |
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| T |
22153898 |
caatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaacacactgaagagagctatccggtgggagcgagttccttatagcaaggttga |
22153997 |
T |
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| Q |
101 |
tctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaaccctcctcgggag |
198 |
Q |
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| T |
22153998 |
tctttgttgggattc---------------------taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggag |
22154076 |
T |
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| Q |
199 |
accatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta |
257 |
Q |
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| T |
22154077 |
accatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttatttta |
22154135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 22209813 - 22210050
Alignment:
| Q |
1 |
caatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttga |
100 |
Q |
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||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22209813 |
caatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaacacactgaagagagctatccggtgggagcgagttccttatagcaaggttga |
22209912 |
T |
|
| Q |
101 |
tctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaaccctcctcgggag |
198 |
Q |
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| T |
22209913 |
tctttgttgggattc---------------------taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggag |
22209991 |
T |
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| Q |
199 |
accatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta |
257 |
Q |
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| T |
22209992 |
accatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttatttta |
22210050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 34821645 - 34821709
Alignment:
| Q |
88 |
atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccacttt |
152 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| |
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| T |
34821645 |
atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccacttt |
34821709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 34821782 - 34821823
Alignment:
| Q |
223 |
catcaatgtttccaatttagaatacattgattttaccgaaaa |
264 |
Q |
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| T |
34821782 |
catcaatgtttccaatctagaatacattgattttaccgaaaa |
34821823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 53561944 - 53561835
Alignment:
| Q |
158 |
gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta |
257 |
Q |
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||||| ||||||||||||||| || ||||||||| || ||||||| | || ||||| | |||||||||||||||||| |||||||| ||||| | |
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| T |
53561944 |
gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa |
53561845 |
T |
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| Q |
258 |
ccgaaaaagt |
267 |
Q |
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|||||||||| |
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| T |
53561844 |
ccgaaaaagt |
53561835 |
T |
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