View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16828_low_12 (Length: 240)
Name: NF16828_low_12
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1877537 - 1877323
Alignment:
| Q |
1 |
aatgccttgtgggaacatagcagtcaacttatagactcaacagtgtttgaaatattttaatcactttcaccttcttgccctttgtgtaacacatagaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1877537 |
aatgccttgtgggaacatagcagtcaacttatagactcaacagtgtttgaaatattttaatccctttcaacttcttgccctttgtgtaacacatagaggg |
1877438 |
T |
|
| Q |
101 |
aaagcttttgaattaaaaacctataatgcttgggcaatgggcatgaatctagcatgaagaatgattagaagaaaaaaccatttgatacgtctcctatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1877437 |
aaagcttttgaattaaaaacctataatgcttg-------ggcatgaatctagcatgaagaatgattagaagaaaaaaccatttgatacgtctcctatagt |
1877345 |
T |
|
| Q |
201 |
cctataagtggttggtccatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1877344 |
cctataagtggttggtccatat |
1877323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University