View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16828_low_17 (Length: 215)
Name: NF16828_low_17
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 31785259 - 31785061
Alignment:
| Q |
7 |
ctggcaagtgattttattatgtcatgcttttcaaagtggacactttatcaatgctctcgacctcattaatttggtctattgattcaccttggatatatca |
106 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
31785259 |
ctggcaagtgattttattatatcctgcttttcaaagtggacgctttct--atgctctcgacctcattaatttggtctattcatccaccttggatatatca |
31785162 |
T |
|
| Q |
107 |
tgctttcaatactaaaacattcttcatgacaagtggttcaggcttagagaagtgttcgttgattcgannnnnnnncatcttcttactttattatgatgat |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
31785161 |
tgctttcaatactaaaacattcttaatgacaagtgctttaggcttagagaagtgttcgttgattcaattttttttcatcttcttactttattatgatgat |
31785062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 32801410 - 32801611
Alignment:
| Q |
4 |
tatctggcaagtgattttattatgtcatgcttttcaaagtggacactttatcaatgctctcgacctcattaatttggtctattgattcaccttggatata |
103 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| || ||| ||||| ||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
32801410 |
tatctggcaagtgattttattatatcctgcttttcaaagtggacgct--atctatgctttcgacttcattaatttggtctattcattcaccttggatata |
32801507 |
T |
|
| Q |
104 |
tcatgctttcaatactaaaacattcttcatgacaagtggttcaggcttagagaagtgttcgttgattcgannnnnnnncatcttcttactttattatgat |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
32801508 |
tcatgctttcaatactaaaacattcttaatgataagtgcttcaggcttagagaagtgttcgttgattcgattttttttcatcttcttactttactatgat |
32801607 |
T |
|
| Q |
204 |
gatg |
207 |
Q |
| |
|
|||| |
|
|
| T |
32801608 |
gatg |
32801611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 5909834 - 5909693
Alignment:
| Q |
4 |
tatctggcaagtgattttattatgtcatgcttttcaaagtggacactttatcaatgctctcgacctcattaatttggtctattgattcaccttggatata |
103 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||||||||||| |||| || |||||||||| ||||||||||| |||||| || ||||||||| | |
|
|
| T |
5909834 |
tatctggcaagtgattttattgtgtcctgcttatcaaagtggacgctttctc--tgctctcgacatcattaatttgttctattcctttaccttggatctg |
5909737 |
T |
|
| Q |
104 |
tcatgctttcaatactaaaacattcttcatgacaagtggttcag |
147 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5909736 |
tcatgttttcaatactaaaacattcttactgacaagtgcttcag |
5909693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 17759246 - 17759321
Alignment:
| Q |
95 |
ttggatatatcatgctttcaatactaaaacattcttcatgacaagtggttcaggcttagagaagtgttcgttgattc |
171 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
17759246 |
ttggatttgtcatgttttcaatactaaaacattcttactgacaagtgcttcaggcttaaagaagt-ttcgttgattc |
17759321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University