View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16828_low_2 (Length: 619)
Name: NF16828_low_2
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 20 - 604
Target Start/End: Original strand, 40048095 - 40048685
Alignment:
| Q |
20 |
aacactagcattaaccacaccagttgaaagactaacactggtaccaaacgattcgatgttcaatggaagctttaaagggtctttaccagccactgtctca |
119 |
Q |
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| T |
40048095 |
aacactagcattaaccacaccagttgaaagactaacactggtaccaaacgattcgatgttcaatggaagctttaaagggtctttaccagccactgtctca |
40048194 |
T |
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| Q |
120 |
acagggttactaagagaatcaaagttattgctatcaacaaactgtggaagaatgtggaattgtaatagttcgannnnnnngttttcgtttagtgagttga |
219 |
Q |
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| T |
40048195 |
acagggttactaagagaatcaaagttattgctatcaacaaactgtggaagaatgtggaattgtaatagttcgatttttttgttttcgtttagcgagttga |
40048294 |
T |
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| Q |
220 |
agaaccccgctttgagatgcgagaaagctgagtcatccggtgccaagattgttaatccgccgctttttggtgatatgagttgtgagtttaggttgtccac |
319 |
Q |
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| T |
40048295 |
agaaccctgctttgagatgcgagaaagctgagtcatccggtgccaagattgttaatccgccgctttttgctgatatgagttgtgagtttaggttgtccac |
40048394 |
T |
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| Q |
320 |
gatttgtgttgttcttaggagacgggttaggattgtgaatgttttcgcctttttgaggatttttgttatgtcgtccggggtggaatctgaggtgtctggt |
419 |
Q |
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| T |
40048395 |
gatttgtgttgttcttaggagacgggttaggattgtgaatgttttcgcctttttgaggatttttgttatgtcgtccggggtggaatctgaggtgtctggt |
40048494 |
T |
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| Q |
420 |
aatgtcgggactaatggttttgtcgatgttggtgacgctgcttttggtgccggggcatgtttcggtgacgc------tgctggtgctgttgctgtcgctg |
513 |
Q |
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| T |
40048495 |
aatgtcgggactaatggttttgtcgatgttggtgacgctgcttttggtgccggggcatgtttcggtgatgctgcttgtgctggtgctgttgctgtcgctg |
40048594 |
T |
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| Q |
514 |
ttgctgctgtgttgggagaatacaatgaggagaacatgagtagaaagagtgagaaggaaaagataatttgattcatatttggcttgatgat |
604 |
Q |
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| T |
40048595 |
ttgctgctatgttgggagaatacaatgaggagaacatgagtagaaagagtgagaaggaaaagataatttgattcatatttggcttgatgat |
40048685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 394
Target Start/End: Complemental strand, 22056210 - 22056082
Alignment:
| Q |
266 |
gattgttaatccgccgctttttggtgatatgagttgtgagtttaggttgtccacgatttgtgttgttcttaggagacgggttaggattgtgaatgttttc |
365 |
Q |
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||||||||| |||||| |||||| || ||||| || ||||||| | || || ||||| ||||||| ||||||||||| |||||| | |||||||||| |
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| T |
22056210 |
gattgttaagccgccgttttttgctgtgatgagctgcgagtttacgctgctcatgatttctgttgtttttaggagacggattaggacggagaatgttttc |
22056111 |
T |
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| Q |
366 |
gcctttttgaggatttttgttatgtcgtc |
394 |
Q |
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| T |
22056110 |
gcctttttaaggattgttgtgatgtcgtc |
22056082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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