View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16828_low_3 (Length: 571)
Name: NF16828_low_3
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 5860023 - 5859772
Alignment:
| Q |
15 |
cacagacaatcgagttcttatgtaaggactatgtgcgacgtcgcgtgaatgtggataaaaatttatggaaaacaaaggtgtgaaatatgaatatacagat |
114 |
Q |
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| T |
5860023 |
cacatacaatcgagttcttatgtaaggactatatgcgacgtcgcgtgaatgtggataaaaatttatggaaaacaaaggtgtgaaatatgaatatacagat |
5859924 |
T |
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| Q |
115 |
agcatgaagaaattacaactttcgcatatatgtatcaacaatataccttacgtatgtgtagtgctttgcgaacattatcatcattagcccagaaacccat |
214 |
Q |
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| T |
5859923 |
agcatgaagaaattacaactttcgcatatatgtatcaacaatataccttacgtatgtgtagtgctttgcgaacattatcatcattagcccagaaacccat |
5859824 |
T |
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| Q |
215 |
aaggaaatatgaataactctaaaagtggaaaggaagcaaacatcaagttaac |
266 |
Q |
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| T |
5859823 |
aaggaaatatgaataactctaaaagtggaaaggaagcaaacatcaagttaac |
5859772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 331 - 553
Target Start/End: Complemental strand, 5859673 - 5859451
Alignment:
| Q |
331 |
gtaagaagcattactcgacaacttaagggtggcaatttgagatttatattgaggaacttggagaaataattcttaattagagatctcctcggagattttt |
430 |
Q |
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| T |
5859673 |
gtaagaagcattactcgacaacttaagggtggcaatttgagatttatatggaggaacttggagaaataattcttaattagagatctcctcggagattttt |
5859574 |
T |
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| Q |
431 |
cattatcgtcacgccactcacatagtgggtctaaaatatgtgctgtattaagtcctgatgtgagctgtgaaaaatagaagaatgatgttcatttttgtaa |
530 |
Q |
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| T |
5859573 |
cattatcgtcacgccactcacatagtgggtctaaaatatgtgctgtattaagtcctgatgtgagctgtgaaaaatagaagaatgatgttcatttttgtaa |
5859474 |
T |
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| Q |
531 |
ctagtaattctactcgcgaaatt |
553 |
Q |
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| T |
5859473 |
ctagtaattctactcgcgaaatt |
5859451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 5866436 - 5866324
Alignment:
| Q |
155 |
atataccttacgtatgtgtagtgctttgcgaacattatcatcattagcccagaaacccataaggaaatatgaataactctaaaagtggaaaggaagc-aa |
253 |
Q |
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| T |
5866436 |
atataccttctgtatgtgtagcgctttgcgaacattatcatcattggcccaataacccataaggaaatatgtataactctaagggtggaaaggaaacaaa |
5866337 |
T |
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| Q |
254 |
acatcaagttaac |
266 |
Q |
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| T |
5866336 |
atatcaagttaac |
5866324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 333 - 553
Target Start/End: Complemental strand, 5866266 - 5866044
Alignment:
| Q |
333 |
aagaagcattactcgacaacttaagggtggcaatttgagatttatattgaggaacttggagaaataattcttaattagagatctcctcggagatttttca |
432 |
Q |
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||||||||||||||| || ||||| ||||||||||||||||| | |||||||| |||| | || || || || ||||||||||| ||||| |||||| |
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| T |
5866266 |
aagaagcattactcggcagcttaaaagtggcaatttgagatttgtgttgaggaaattggtgggatctttattgatgagagatctccttggagaattttca |
5866167 |
T |
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| Q |
433 |
ttatcgtcacgccactcacatagtgggtctaaaatatgtgctgtattaagtcctgatgtgagctgtg--aaaaatagaagaatgatgttcatttttgtaa |
530 |
Q |
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||| ||| |||||||||| || ||||||||||||| | || || ||||||||||| ||||| ||||| | ||||||| ||||| |||||| | |
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| T |
5866166 |
gtattatcaagccactcacaactcggctctaaaatatgtggttcatgaattcctgatgtgacctgtggaaaaaagaaaagaatgttgttcggttttgtga |
5866067 |
T |
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| Q |
531 |
ctagtaattctactcgcgaaatt |
553 |
Q |
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|||| || ||||||||||||||| |
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| T |
5866066 |
ctagaaactctactcgcgaaatt |
5866044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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