View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16828_low_4 (Length: 537)
Name: NF16828_low_4
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 74 - 528
Target Start/End: Complemental strand, 55011867 - 55011404
Alignment:
| Q |
74 |
aaagcggattgtaaatgtaaagtaaaccggcacagttatctaggaagaacgcacgatgattttccatttcaataaattgattt---tatgaataccgtaa |
170 |
Q |
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| T |
55011867 |
aaagcggattgtaaatgtaaa-taaaccggcacagttatctaggaagaacgcacgatgattttccatttcaataaattgatttatgaatgaataccgtaa |
55011769 |
T |
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| Q |
171 |
ataaattatgcaaccnnnnnnntaaattaaggaaga-gtgaaaagt------ccgtgagtgagtgaacccaacgattgagtaaaatgaaaaatacctgaa |
263 |
Q |
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| T |
55011768 |
ataaattatgcaaccaaaaaaataaattaaggaagaggtgaaaagtccgtgaccgtgagtgagtgaacccaacgattgagtaaaatgaaaaatacctgaa |
55011669 |
T |
|
| Q |
264 |
caaaaatgcggttagactgagaaacagtcttaagcaaataatcagtactccaacgaattgcgaccaaagcgtttctgagttcattaggaggcatgttttc |
363 |
Q |
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| T |
55011668 |
caaaaatgcggttagactgagaaacagtcttaagcaaataatcagtactccaacgaattgcgaccaaagcgtttctgagttcattaggaggcatgttttc |
55011569 |
T |
|
| Q |
364 |
accaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaaccgccagtaaga |
463 |
Q |
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| T |
55011568 |
accaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaaccgccagtaaga |
55011469 |
T |
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| Q |
464 |
tcagtgttgtaagtccacccatcactcaaacctgaattcgcacgccacttctgtctctgctcctc |
528 |
Q |
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| T |
55011468 |
tcagtgttgtaagtccacccatcactcaaacctgaattcgcacgccacttctgtctctggtcctc |
55011404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 55011924 - 55011885
Alignment:
| Q |
1 |
acatggtaagtagtagtgactaaaattactagtacctatt |
40 |
Q |
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| T |
55011924 |
acatggtaagtagtagcgactaaaattactagtacctatt |
55011885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 365 - 453
Target Start/End: Complemental strand, 44152068 - 44151980
Alignment:
| Q |
365 |
ccaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaacc |
453 |
Q |
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| T |
44152068 |
ccaaaatcaatcacactccaagctaacatcgtcgttgtaaacgccatcggaaacccgaactttatgttgtcgccggcgtcgtagtaacc |
44151980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 39419534 - 39419599
Alignment:
| Q |
363 |
caccaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttga |
428 |
Q |
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| T |
39419534 |
caccaaactcaataacactccatgaaagcatagtggtagtaaaagccataggaaaaccaaacttga |
39419599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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