View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16828_low_7 (Length: 463)

Name: NF16828_low_7
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16828_low_7
NF16828_low_7
[»] chr4 (35 HSPs)
chr4 (11-182)||(43309888-43310056)
chr4 (216-403)||(43310090-43310277)
chr4 (210-284)||(30317265-30317339)
chr4 (216-284)||(33647753-33647821)
chr4 (216-284)||(36262778-36262846)
chr4 (224-284)||(47078490-47078550)
chr4 (225-284)||(7741957-7742016)
chr4 (213-284)||(49260673-49260744)
chr4 (224-284)||(5472867-5472927)
chr4 (208-284)||(8424586-8424662)
chr4 (216-280)||(15732459-15732523)
chr4 (208-284)||(38075465-38075541)
chr4 (224-284)||(42722596-42722656)
chr4 (208-279)||(14567276-14567347)
chr4 (226-284)||(16450332-16450390)
chr4 (211-285)||(26479955-26480029)
chr4 (215-284)||(20532419-20532488)
chr4 (224-284)||(2559339-2559399)
chr4 (224-284)||(3159488-3159548)
chr4 (216-284)||(3507302-3507370)
chr4 (224-284)||(7246665-7246725)
chr4 (208-280)||(31588722-31588794)
chr4 (224-284)||(38166059-38166119)
chr4 (224-284)||(38168289-38168348)
chr4 (224-284)||(40780880-40780940)
chr4 (228-284)||(43458645-43458701)
chr4 (216-284)||(53599092-53599160)
chr4 (221-284)||(17080075-17080138)
chr4 (238-284)||(50485975-50486021)
chr4 (208-281)||(29588771-29588844)
chr4 (224-285)||(47682401-47682462)
chr4 (224-284)||(4738650-4738710)
chr4 (224-280)||(29895823-29895879)
chr4 (216-280)||(33109360-33109424)
chr4 (240-284)||(48015108-48015152)
[»] chr8 (16 HSPs)
chr8 (221-284)||(1012993-1013056)
chr8 (208-284)||(8141133-8141209)
chr8 (208-284)||(10927637-10927713)
chr8 (216-284)||(43032932-43033000)
chr8 (224-284)||(4479315-4479375)
chr8 (224-284)||(6100503-6100563)
chr8 (224-280)||(16291222-16291278)
chr8 (224-284)||(18374041-18374101)
chr8 (216-284)||(24837273-24837341)
chr8 (208-267)||(43027353-43027412)
chr8 (247-285)||(16893967-16894005)
chr8 (216-284)||(2964107-2964175)
chr8 (224-276)||(8997563-8997615)
chr8 (226-282)||(10535425-10535481)
chr8 (224-280)||(15884575-15884631)
chr8 (248-284)||(34593577-34593613)
[»] scaffold0170 (1 HSPs)
scaffold0170 (216-284)||(9875-9943)
[»] chr5 (29 HSPs)
chr5 (216-284)||(42291516-42291584)
chr5 (225-284)||(12081936-12081995)
chr5 (217-280)||(30995153-30995216)
chr5 (221-284)||(40117443-40117506)
chr5 (224-281)||(8513550-8513607)
chr5 (220-284)||(7308379-7308443)
chr5 (224-284)||(9805032-9805092)
chr5 (228-284)||(26077169-26077225)
chr5 (216-284)||(38897730-38897798)
chr5 (221-284)||(3653930-3653993)
chr5 (224-279)||(14974343-14974398)
chr5 (208-267)||(27648428-27648487)
chr5 (225-285)||(14588637-14588697)
chr5 (224-280)||(19572756-19572812)
chr5 (208-280)||(22295248-22295320)
chr5 (216-284)||(25417194-25417262)
chr5 (216-284)||(37263268-37263336)
chr5 (224-280)||(39099798-39099854)
chr5 (228-284)||(41801005-41801061)
chr5 (224-284)||(42086355-42086415)
chr5 (237-285)||(43399155-43399203)
chr5 (242-284)||(20682654-20682696)
chr5 (224-284)||(5731939-5731999)
chr5 (224-284)||(7866609-7866669)
chr5 (224-284)||(9168272-9168332)
chr5 (210-266)||(20228763-20228819)
chr5 (216-276)||(20525874-20525934)
chr5 (224-284)||(23383685-23383745)
chr5 (240-284)||(28862853-28862897)
[»] chr2 (30 HSPs)
chr2 (221-280)||(7787087-7787146)
chr2 (224-284)||(24179595-24179655)
chr2 (224-284)||(25540423-25540483)
chr2 (224-284)||(41220662-41220722)
chr2 (224-284)||(45263686-45263746)
chr2 (221-279)||(25549760-25549818)
chr2 (216-284)||(34722707-34722775)
chr2 (216-284)||(38962790-38962858)
chr2 (238-284)||(9360781-9360827)
chr2 (238-284)||(10823087-10823133)
chr2 (238-280)||(21180347-21180389)
chr2 (238-284)||(29653654-29653700)
chr2 (224-284)||(3643906-3643966)
chr2 (224-284)||(10669619-10669679)
chr2 (208-284)||(11069905-11069981)
chr2 (224-284)||(12455337-12455397)
chr2 (216-284)||(38005429-38005497)
chr2 (224-284)||(42770670-42770730)
chr2 (224-279)||(22593166-22593221)
chr2 (224-267)||(39201527-39201570)
chr2 (238-280)||(8410162-8410204)
chr2 (238-284)||(44139511-44139557)
chr2 (239-280)||(28525489-28525530)
chr2 (216-285)||(28616390-28616459)
chr2 (224-280)||(6358170-6358226)
chr2 (224-284)||(7747301-7747361)
chr2 (224-284)||(10026635-10026695)
chr2 (224-284)||(21286471-21286531)
chr2 (224-284)||(35946765-35946825)
chr2 (216-284)||(44945620-44945688)
[»] chr7 (27 HSPs)
chr7 (208-285)||(41945502-41945579)
chr7 (216-284)||(23658209-23658277)
chr7 (224-284)||(26423306-26423366)
chr7 (216-279)||(3353459-3353522)
chr7 (208-284)||(17748385-17748461)
chr7 (224-280)||(21530782-21530838)
chr7 (216-284)||(22993378-22993446)
chr7 (216-268)||(32768983-32769035)
chr7 (221-284)||(1797490-1797553)
chr7 (237-280)||(30827326-30827369)
chr7 (221-284)||(43861988-43862051)
chr7 (216-284)||(1605971-1606039)
chr7 (224-280)||(13095892-13095948)
chr7 (224-284)||(38578886-38578946)
chr7 (224-280)||(38988934-38988990)
chr7 (224-280)||(43346798-43346854)
chr7 (208-280)||(47341910-47341982)
chr7 (240-284)||(49142704-49142748)
chr7 (208-267)||(3603404-3603463)
chr7 (221-280)||(5039434-5039493)
chr7 (238-284)||(34659256-34659302)
chr7 (224-285)||(27875107-27875168)
chr7 (224-281)||(28744195-28744252)
chr7 (224-284)||(16802153-16802213)
chr7 (216-284)||(22973997-22974065)
chr7 (221-265)||(48244372-48244416)
chr7 (224-280)||(48804717-48804773)
[»] chr6 (18 HSPs)
chr6 (224-284)||(19230578-19230638)
chr6 (224-284)||(9633644-9633704)
chr6 (224-284)||(21898679-21898739)
chr6 (224-284)||(29444784-29444844)
chr6 (216-284)||(2271314-2271382)
chr6 (224-284)||(3601115-3601175)
chr6 (241-285)||(9366459-9366503)
chr6 (224-268)||(14326044-14326088)
chr6 (224-268)||(14419054-14419098)
chr6 (225-284)||(12606461-12606520)
chr6 (238-284)||(14107391-14107437)
chr6 (226-284)||(29333160-29333218)
chr6 (224-269)||(8149816-8149861)
chr6 (238-279)||(13391322-13391363)
chr6 (216-284)||(3587956-3588024)
chr6 (224-280)||(6606116-6606172)
chr6 (224-280)||(19089533-19089589)
chr6 (216-280)||(32157178-32157242)
[»] chr1 (33 HSPs)
chr1 (216-284)||(50371846-50371914)
chr1 (211-284)||(38791617-38791690)
chr1 (208-284)||(5855550-5855626)
chr1 (224-280)||(17642024-17642080)
chr1 (216-284)||(43959833-43959901)
chr1 (237-284)||(32899-32946)
chr1 (221-284)||(33498856-33498919)
chr1 (216-266)||(17092489-17092539)
chr1 (226-284)||(33418137-33418195)
chr1 (216-281)||(12036756-12036821)
chr1 (224-280)||(4581702-4581758)
chr1 (224-280)||(8764023-8764079)
chr1 (228-284)||(14254292-14254348)
chr1 (208-280)||(32142850-32142922)
chr1 (224-284)||(37339848-37339908)
chr1 (224-284)||(40288497-40288557)
chr1 (216-284)||(44969692-44969760)
chr1 (226-280)||(10422820-10422874)
chr1 (238-284)||(21849239-21849285)
chr1 (239-281)||(33004050-33004092)
chr1 (221-279)||(45726450-45726508)
chr1 (234-280)||(49078146-49078192)
chr1 (211-284)||(15465993-15466066)
chr1 (224-285)||(34719803-34719864)
chr1 (224-281)||(35211192-35211249)
chr1 (224-284)||(2567304-2567364)
chr1 (208-280)||(2980935-2981007)
chr1 (248-284)||(6563469-6563505)
chr1 (224-284)||(10172991-10173051)
chr1 (224-284)||(16956494-16956554)
chr1 (224-280)||(18915899-18915955)
chr1 (216-284)||(30927739-30927807)
chr1 (224-284)||(45361902-45361962)
[»] scaffold0384 (1 HSPs)
scaffold0384 (209-284)||(6002-6077)
[»] scaffold0011 (2 HSPs)
scaffold0011 (224-279)||(186552-186607)
scaffold0011 (224-274)||(224357-224407)
[»] chr3 (29 HSPs)
chr3 (208-267)||(7310707-7310766)
chr3 (238-284)||(10855411-10855457)
chr3 (210-280)||(49198382-49198452)
chr3 (216-265)||(47164152-47164201)
chr3 (224-280)||(3507553-3507609)
chr3 (224-284)||(28572231-28572291)
chr3 (208-280)||(47749109-47749181)
chr3 (224-284)||(54261253-54261313)
chr3 (224-284)||(55069699-55069759)
chr3 (213-284)||(8164580-8164651)
chr3 (221-284)||(35923640-35923703)
chr3 (234-280)||(45877485-45877531)
chr3 (208-281)||(47471861-47471934)
chr3 (216-284)||(8362604-8362672)
chr3 (224-284)||(10040583-10040643)
chr3 (216-280)||(26043843-26043907)
chr3 (216-284)||(48342047-48342115)
chr3 (216-267)||(15320230-15320281)
chr3 (224-267)||(50753361-50753404)
chr3 (238-284)||(6462439-6462485)
chr3 (238-284)||(15795528-15795574)
chr3 (208-285)||(34662323-34662400)
chr3 (238-267)||(49543563-49543592)
chr3 (224-280)||(7650258-7650314)
chr3 (208-280)||(29127950-29128022)
chr3 (224-280)||(30767267-30767323)
chr3 (224-280)||(43330752-43330808)
chr3 (228-284)||(47219171-47219227)
chr3 (216-280)||(53649758-53649822)
[»] scaffold0005 (1 HSPs)
scaffold0005 (208-279)||(250028-250099)
[»] scaffold0291 (1 HSPs)
scaffold0291 (224-280)||(6889-6945)
[»] scaffold0010 (1 HSPs)
scaffold0010 (224-284)||(155730-155790)
[»] scaffold0086 (1 HSPs)
scaffold0086 (237-284)||(26213-26260)
[»] scaffold0029 (1 HSPs)
scaffold0029 (225-267)||(41091-41133)
[»] scaffold0376 (1 HSPs)
scaffold0376 (216-284)||(12700-12768)
[»] scaffold0341 (1 HSPs)
scaffold0341 (248-284)||(18662-18698)
[»] scaffold0016 (1 HSPs)
scaffold0016 (224-284)||(8720-8780)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 43309888 - 43310056
Alignment:
Q  11 cacagatggatgataccaagtaaggtaagtattaggctagcagcatcactcaaaatgataagcgtttgagttaataatcgccaataagaataaagataac 110  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  43309888 cacacatggatgataccaaataaggtaagtattaggctagcagcatcactcaaaatgataagagtttgagttaataatcgccaataagaataaagataat 43309987  T
Q  111 aacaataaaataatctactatgatacaacaactagtgtttaatttctatcatatagtttcgatgtaaagtta 182  Q
    ||||||||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  43309988 aacaataaaataatccactatgat---acaactagtgtttaatttctatcatatagtttcgatgtaaagtta 43310056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 216 - 403
Target Start/End: Original strand, 43310090 - 43310277
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgttaaattttcacatgcatcaaactacattttat 315  Q
    |||||||||||  |||| || ||| |||||||  |||||||||| ||||||  | ||||||||| | ||| ||||||||||||||||||||| |||||||    
T  43310090 tttctgatccattaaaggtggacggctaattcaactcgtgcgtaaaggcatacgcactggccaaacattatattttcacatgcatcaaactatattttat 43310189  T
Q  316 cacaagccatatctttgaaattaaattaatagctcacagtactaatatctattatattatttttcaaaatatatcaataaaattttac 403  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43310190 cacaagccatatttttgaaattaaattaatagctcacagtactaatatctattatattatttttcaaaatgtatcaataaaattttac 43310277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 30317339 - 30317265
Alignment:
Q  210 catcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||| |||| || ||||||||| ||  |||||||||||||||||||||||||||||  ||||||||||||||||    
T  30317339 catcggtttccgacccaccaaaggtgggcgactaattcggctcgtgcgtagaggcattcgtactggccaagcgtt 30317265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 33647821 - 33647753
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||||||||||||||||||  || ||||||||||||| ||||| ||||| ||||||||    
T  33647821 tttccgatccaccaaagatgaacgactaatctggttcgtgcgtagaggaatgtgcactggtcaagcgtt 33647753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 36262778 - 36262846
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||| ||  |||||||| || |||||||||||||||||||| ||||||||||||||    
T  36262778 tttctgacccaccaaaggtgggcgactaatccgactcgtgcgtagaggcatgtgcactggccaagcgtt 36262846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 47078550 - 47078490
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| | ||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  47078550 ccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgtt 47078490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 7742016 - 7741957
Alignment:
Q  225 caccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||||| |||||||||  || ||||||||||||||||||| ||||||||||||||    
T  7742016 caccaaagatggacgactaatctggatcgtgcgtagaggcatgtgcactggccaagcgtt 7741957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 49260673 - 49260744
Alignment:
Q  213 cgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| || ||||||||| ||  |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  49260673 cgatttccgacccaccaaaggtggtcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 49260744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 5472867 - 5472927
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  5472867 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 5472927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 8424662 - 8424586
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||  || ||||||||||||| ||| ||||| ||||||||| |||||||||| | ||||||||| ||||    
T  8424662 cgcatcgattttcgacccaccaaagatgagcgattaatttggctcgtgcatagaggcatgcgcactggccaaacgtt 8424586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 15732459 - 15732523
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||| |||||||||||||||| ||||||||   || |||||||||||||||||| ||||||||||    
T  15732459 tttccgatccaccaaagatgagcgactaatctagcccgtgcgtagaggcatgtgcactggccaag 15732523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 38075541 - 38075465
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||| || ||||||||| || || | ||||||||||| |||||||||||||| | ||||||||||||||    
T  38075541 cgcatcggtttccgacccaccaaaggtggacaattaattcggctcatgcgtagaggcatgcgcactggccaagcgtt 38075465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 42722596 - 42722656
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| |||||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  42722596 ccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 42722656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 14567347 - 14567276
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    |||| ||||||| || |||||||||  || |||||||| ||||||||||||||||||||| | |||||||||    
T  14567347 cgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagaggcatgcgcactggccaa 14567276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 16450390 - 16450332
Alignment:
Q  226 accaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| || |||||||||  ||||| |||||||||||||||| ||||||||||||||    
T  16450390 accaaaggtggacgactaatctggctcatgcgtagaggcatgtgcactggccaagcgtt 16450332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 26479955 - 26480029
Alignment:
Q  211 atcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    |||| |||| ||| || ||| |||| |||| ||||||||||| |||||||||||||| |||||||||||| ||||    
T  26479955 atcggtttccgattcatcaatgatggacgattaattcggctcatgcgtagaggcatgcgtactggccaagtgtta 26480029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 20532419 - 20532488
Alignment:
Q  215 atttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||| |||||||||||| ||  ||||| || |||||| |||||||||||||| | ||||||||||||||    
T  20532419 atttccgatccaccaaaggtgggcgacttatccggctcatgcgtagaggcatgcgcactggccaagcgtt 20532488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 2559399 - 2559339
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || |||| |||| ||||| ||||||||||||||| | ||||||||||||||    
T  2559399 ccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcactggccaagcgtt 2559339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 3159488 - 3159548
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| | ||| ||||||||  |||||||||||||||||||| | ||||||||||||||    
T  3159488 ccaccaatggtgagcgactaatctggctcgtgcgtagaggcatgcgcactggccaagcgtt 3159548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 3507370 - 3507302
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||||| || ||||||||| ||||||||| ||||||||| | | ||| ||||||||||    
T  3507370 tttccgatccaccaaaggtggacgactaatccggctcgtgtgtagaggcacgcgcactagccaagcgtt 3507302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 7246665 - 7246725
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| |||||| |||||||||||||| | ||||||||||||||    
T  7246665 ccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 7246725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 31588794 - 31588722
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| |||| |||||||||||  ||| |||||||| |||||| ||||||||| |||| | ||||||||||    
T  31588794 cgcatcggtttccgatccaccaaaagtgagcgactaatccggctcatgcgtagagacatgcgcactggccaag 31588722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 38166119 - 38166059
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| |||||||||||||||| |||| | ||||||||||||||    
T  38166119 ccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgtt 38166059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 38168348 - 38168289
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| |||||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  38168348 ccactaaaggtgaacgactaatccggctcatgcgtagaggcatg-gcactggccaagcgtt 38168289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 40780880 - 40780940
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| |||||| |||||||||||||| | |||| |||||||||    
T  40780880 ccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagcgtt 40780940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 43458701 - 43458645
Alignment:
Q  228 caaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||| || ||||||||| |||||||| |||||||||||| | ||||||||||||||    
T  43458701 caaaggtggacgactaatccggctcgtccgtagaggcatgcgcactggccaagcgtt 43458645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 53599160 - 53599092
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||||||| |||| ||||||| |||| |||||| |||||||||||||| | ||||||||| ||||    
T  53599160 tttccgatccactaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaaacgtt 53599092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 17080138 - 17080075
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||| ||||| ||  |||||||| |||||| |||||||||||||| | ||||||||||||||    
T  17080138 gatccatcaaaggtgtgcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 17080075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 50486021 - 50485975
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| ||||||||||||||||||||| || |||||||| ||||    
T  50486021 cgactaatccggctcgtgcgtagaggcatgcgttctggccaatcgtt 50485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 29588844 - 29588771
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagc 281  Q
    |||||||||||| || ||||||| | || |  |||||| ||||||||||||||||||||| | ||| |||||||    
T  29588844 cgcatcgatttccgacccaccaatggtggataactaatccggctcgtgcgtagaggcatgcgcactagccaagc 29588771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 47682401 - 47682462
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    ||||||||| ||  |||||||  |||||||||||||||| |||||| ||||||||| |||||    
T  47682401 ccaccaaaggtgggcgactaacccggctcgtgcgtagagacatgtgcactggccaaacgtta 47682462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 4738710 - 4738650
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||||| |||| ||||||||| |||| | |||||| |||||||    
T  4738710 ccaccaaaggtggacgactaattcagctcatgcgtagagacatgcgcactggcaaagcgtt 4738650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 29895879 - 29895823
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| | || ||||||||| |||||| |||||||||||||| | ||||||||||    
T  29895879 ccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaag 29895823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 33109424 - 33109360
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||||| ||  ||||  | |||||| |||||||||||||||| |||| ||||||||||||    
T  33109424 tttctgatccatcattgatgggcaactaatccggctcgtgcgtagagacatgcgtactggccaag 33109360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 48015108 - 48015152
Alignment:
Q  240 actaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||| |||||||||||||||||| || | ||||||||||||||    
T  48015108 actaatccggctcgtgcgtagaggcttgcgcactggccaagcgtt 48015152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 1012993 - 1013056
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  1012993 gatccactaaaggtgaacgattaattcggctcatgcgtagaggcatgtgtactggccaagcgtt 1013056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 8141209 - 8141133
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||| ||||||||  || ||||||||||| |||| |||||||||||||| | ||||||||||||||    
T  8141209 cgcatcggtttctgacccaccaaatgtggacgactaattcagctcatgcgtagaggcatgcgcactggccaagcgtt 8141133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 10927713 - 10927637
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||| || |||| |||| |||||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  10927713 cgcatcggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 10927637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 43033000 - 43032932
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||| ||  |||||||| ||||||||| ||||||||||| | ||||||||||||||    
T  43033000 tttctgacccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcactggccaagcgtt 43032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 4479315 - 4479375
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| | |||| |||||||||||||| | ||||||||||||||    
T  4479315 ccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgtt 4479375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 6100563 - 6100503
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| |||||||||||| |||||| ||||||| |||||| | ||||||||||||||    
T  6100563 ccactaaaggtgaacgactaatccggctcatgcgtagtggcatgcgcactggccaagcgtt 6100503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 16291222 - 16291278
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||| |||||||| | |||| ||| |||||||||||||||||||||||    
T  16291222 ccaccaaaggtgagcgactaatccagctcatgcatagaggcatgtgtactggccaag 16291278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 18374101 - 18374041
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| |||||| |||||||||||||| | ||||| ||||||||    
T  18374101 ccaccaaagttggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgtt 18374041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 24837341 - 24837273
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||||| || ||||||||| | |||||||| ||||||||||   ||||||||||||||    
T  24837341 tttccgatccaccaaaggtggacgactaatcctgctcgtgcttagaggcatgaacactggccaagcgtt 24837273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 43027412 - 43027353
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    ||||||| |||| || ||| |||||||| ||||||||| |||||| ||||||||||||||    
T  43027412 cgcatcggtttccgacccatcaaagatggacgactaatccggctcatgcgtagaggcatg 43027353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 16894005 - 16893967
Alignment:
Q  247 cggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  16894005 cggctcatgcgtaaaggcatgtgtactggccaagcgtta 16893967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 2964175 - 2964107
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||| ||  |||||||| ||| |||||||||||||||||   | ||||||||||||    
T  2964175 tttctgacccaccaaaggtgggcgactaatccggttcgtgcgtagaggcatgcacattggccaagcgtt 2964107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 8997563 - 8997615
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggc 276  Q
    ||||||||||||||||||||||  ||||| |||||| ||||||| | ||||||    
T  8997563 ccaccaaagatgaacgactaatctggctcatgcgtataggcatgcgaactggc 8997615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 10535425 - 10535481
Alignment:
Q  226 accaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcg 282  Q
    ||||||| ||||||||||||||||||| ||||| ||| |||| | ||||| ||||||    
T  10535425 accaaaggtgaacgactaattcggctcatgcgtggagacatgcgcactggtcaagcg 10535481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 15884575 - 15884631
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||| | ||| ||||||    
T  15884575 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcacttgccaag 15884631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 34593613 - 34593577
Alignment:
Q  248 ggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  34593613 ggctcgtgcgtagaggcatgtgcactggccaaacgtt 34593577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 9943 - 9875
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||| || ||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  9943 tttctgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 42291516 - 42291584
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||| ||||| || ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  42291516 tttccgatccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgtt 42291584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 12081995 - 12081936
Alignment:
Q  225 caccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| || ||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  12081995 caccaaaggtggacgactaattcggctcgtgcgtagatgcatgcgcactggccaagcgtt 12081936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 30995216 - 30995153
Alignment:
Q  217 ttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||| |  |||||||||    
T  30995216 ttcttatccaccaaagatgagcgactaatccggctcgtgcgtagaggcatgcgccctggccaag 30995153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 40117506 - 40117443
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||| ||||||| |||| |||||| |||||||||||||| | ||||||||||||||    
T  40117506 gatccaccaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 40117443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 8513607 - 8513550
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagc 281  Q
    ||||||||| || |||||||||  |||||||||||||||||||||| |||||||||||    
T  8513607 ccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactggccaagc 8513550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 7308379 - 7308443
Alignment:
Q  220 tgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||| ||| |||||||| |||||| |||||||||||||||| |||| |||||||||    
T  7308379 tgatccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgtgcactgcccaagcgtt 7308443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 9805092 - 9805032
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  9805092 ccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 9805032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 26077225 - 26077169
Alignment:
Q  228 caaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||| ||||  |||||||||||||||||||||| ||||||||||||||    
T  26077225 caaagatgagcgattaatctggctcgtgcgtagaggcatgtgcactggccaagcgtt 26077169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 38897730 - 38897798
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||||| ||  | |||||| ||||||||||||||||||||| | ||||||||||||||    
T  38897730 tttccgatccaccaaaggtgggcaactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 38897798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 3653930 - 3653993
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||| || ||||||||| || |||||||||||||||||| | ||||| ||||||||    
T  3653930 gatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcactggtcaagcgtt 3653993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 14974343 - 14974398
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    ||||||||| || ||||||||| |||||| |||||||||||||||| |||||||||    
T  14974343 ccaccaaaggtggacgactaatccggctcatgcgtagaggcatgtgcactggccaa 14974398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 27648428 - 27648487
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    ||||||| |||| ||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  27648428 cgcatcggtttccgatccaccaaagatggacgactaatccggctcatacgtagaggcatg 27648487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 14588637 - 14588697
Alignment:
Q  225 caccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    |||||||| || ||||||||| |||||| |||||||||||||| | ||||| |||||||||    
T  14588637 caccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgtta 14588697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 19572812 - 19572756
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| | |||||||||||| |||||| |||||||||||||| | ||||||||||    
T  19572812 ccaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaag 19572756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 22295320 - 22295248
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||||||||| | ||||||||| | |||||||| |  ||| |||||||||||||| | ||||||||||    
T  22295320 cgcatcgatttctgacctaccaaagataagcgactaatccaactcatgcgtagaggcatgcgcactggccaag 22295248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 25417194 - 25417262
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||| | | || ||||||| |||||||| |||||||||||| | ||||||||||||||    
T  25417194 tttctgacccaccaatggtaaatgactaatccggctcgttcgtagaggcatgcgcactggccaagcgtt 25417262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 37263336 - 37263268
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||||||  |||| || ||||||||| ||||||||||||||||||||| | | ||||||||||||    
T  37263336 tttccgatccaataaaggtggacgactaatccggctcgtgcgtagaggcatgcgcattggccaagcgtt 37263268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 39099798 - 39099854
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||  |||||||| |||||| |||||||||||||||| ||||||||||    
T  39099798 ccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgtgcactggccaag 39099854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 41801061 - 41801005
Alignment:
Q  228 caaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||||||||| |||||||||||||||| |||| | | ||| ||||||||    
T  41801061 caaagatgaacgactaatccggctcgtgcgtagagacatgcgcattggtcaagcgtt 41801005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 42086415 - 42086355
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| |||||| |||||||||||||| | ||||| ||||||||    
T  42086415 ccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgtt 42086355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 43399203 - 43399155
Alignment:
Q  237 acgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||||    
T  43399203 acgactaatcctgctcgtgcgtagaggcatgcgcactggccaagcgtta 43399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 20682654 - 20682696
Alignment:
Q  242 taattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||||||||||||||||||||| | ||||||||||||||    
T  20682654 taatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 20682696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 5731939 - 5731999
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| ||||||||||||  ||||| | |||||||||||| | ||||||||||||||    
T  5731939 ccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgtt 5731999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 7866669 - 7866609
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| ||| |||||||||||||||||   ||||||||||||||    
T  7866669 ccaccaaaggtgggcgactaatccggttcgtgcgtagaggcatgcacactggccaagcgtt 7866609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 9168272 - 9168332
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| || ||||||||| |||||| |||||||||| ||| | ||||||||||||||    
T  9168272 ccactaaaggtggacgactaatccggctcatgcgtagaggtatgcgcactggccaagcgtt 9168332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 20228819 - 20228763
Alignment:
Q  210 catcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcat 266  Q
    ||||| ||||||||||||||||||||  ||||||||  | |||||| ||||||||||    
T  20228819 catcggtttctgatccaccaaagatgggcgactaatctgactcgtgtgtagaggcat 20228763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 20525934 - 20525874
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggc 276  Q
    |||| |||||||||| | || ||||||||| |||||| |||||||||||||| | ||||||    
T  20525934 tttccgatccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggc 20525874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 23383745 - 23383685
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| | |||| |||||||||||| | | ||||||||||||||    
T  23383745 ccaccaaaggtggacgactaatccagctcatgcgtagaggcaagcgcactggccaagcgtt 23383685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 28862897 - 28862853
Alignment:
Q  240 actaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| | ||||||||||||||||||| | ||||||||||||    
T  28862897 actaattcaggtcgtgcgtagaggcatgtgcattggccaagcgtt 28862853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 7787146 - 7787087
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||||||    
T  7787146 gatccaccaaagatgggcgactaatccggctcgtgcgtagaggcatgcgtactggccaag 7787087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 24179655 - 24179595
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  24179655 ccaccaaagatggacgactaatccggctcatgcgtagaggcatgtgcactggccaaacgtt 24179595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 25540423 - 25540483
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  25540423 ccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 25540483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 41220722 - 41220662
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  41220722 ccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactggccaagcgtt 41220662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 45263686 - 45263746
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||| | ||||||||||||||    
T  45263686 ccaccaaagatgagcgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 45263746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 25549818 - 25549760
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||||| ||| |||||    
T  25549818 gatccatcaaagatggacgactaatccggctcgtgcgtagaggcatgtgcactagccaa 25549760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 34722775 - 34722707
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||||| ||||| ||  |||||||| |||||||||||||||| |||||| |||| |||||||||    
T  34722775 tttctgatccatcaaaggtgggcgactaatccggctcgtgcgtagagacatgtgcactgaccaagcgtt 34722707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 38962858 - 38962790
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||| || ||||||||| ||| || |||||||||||||| | ||||||||||||||    
T  38962858 tttctgacccaccaaaggtggacgactaatccggttcatgcgtagaggcatgcgcactggccaagcgtt 38962790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 9360781 - 9360827
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||    
T  9360781 cgactaattcggctcgtgcgtagaggcatgcgcactggccaaacgtt 9360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 10823133 - 10823087
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  10823133 cgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 10823087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 21180347 - 21180389
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  21180347 cgactaatccggctcgtgcgtagaggcatgtgcactggccaag 21180389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 29653700 - 29653654
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||    
T  29653700 cgactaattcggctcgtgcgtagaggcatgcgcactgcccaagcgtt 29653654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 3643906 - 3643966
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| | |||| |||||||||||||| | ||||||||||||||    
T  3643906 ccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgtt 3643966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 10669679 - 10669619
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||||||| |||| || ||||||||||||| |||| | ||||||||||||||    
T  10669679 ccaccaaaggtgaacgattaatccgactcgtgcgtagagacatgcgcactggccaagcgtt 10669619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 11069981 - 11069905
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||| || ||||||| | || ||||||||||| ||||||||||||||| ||| | ||||||||| ||||    
T  11069981 cgcatcggtttccgacccaccaacggtggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgtt 11069905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 12455397 - 12455337
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| | ||| |||||||| ||||||||||||||||||||| | |||||| |||||||    
T  12455397 ccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggctaagcgtt 12455337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 38005497 - 38005429
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||||| ||  |||||||| |||||| || ||||||||||| | ||||||||||||||    
T  38005497 tttccgatccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactggccaagcgtt 38005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 42770670 - 42770730
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || |||| |||| ||||||||||| ||||||||| | ||||||||||||||    
T  42770670 ccaccaaaggtggacgattaatccggctcgtgcgaagaggcatgcgcactggccaagcgtt 42770730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 22593221 - 22593166
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    ||||||||| || ||||||||| |||||| |||||||||||||| | |||||||||    
T  22593221 ccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 22593166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 39201527 - 39201570
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||    
T  39201527 ccaccaaaggtgaacgactaatccggctcatgcgtagaggcatg 39201570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 8410204 - 8410162
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||| ||||||||||||||||||||| | ||||||||||    
T  8410204 cgactaatccggctcgtgcgtagaggcatgcgcactggccaag 8410162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 44139557 - 44139511
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| ||||||||||||||||||| | | ||||||||||||||    
T  44139557 cgactaatccggctcgtgcgtagaggcacgcgcactggccaagcgtt 44139511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 28525489 - 28525530
Alignment:
Q  239 gactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| ||||||||||||||||||||| | ||||||||||    
T  28525489 gactaatccggctcgtgcgtagaggcatgcgcactggccaag 28525530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 28616390 - 28616459
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    ||||||| |||| |||||||  ||||||||  |||||||||||||||||||| | |||| ||||| ||||    
T  28616390 tttctgacccactaaagatgggcgactaatctggctcgtgcgtagaggcatgcgcactgcccaagtgtta 28616459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 6358170 - 6358226
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| | || ||||||||| |||||| |||||||||||||| | ||||||||||    
T  6358170 ccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaag 6358226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 7747361 - 7747301
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| |||||||||||| |||||| ||||||||||||||   ||||||||| ||||    
T  7747361 ccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacgtt 7747301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 10026635 - 10026695
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| |||||| |||||||||||||| | ||||||||| ||||    
T  10026635 ccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactggccaaacgtt 10026695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 21286531 - 21286471
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||||  ||||||| | ||||||||||||||||||| | ||||| ||||||||    
T  21286531 ccaccaatgatgagtgactaatccagctcgtgcgtagaggcatgcgcactggtcaagcgtt 21286471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 35946825 - 35946765
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| | || ||||||||| |||||||||||||||||||||   | ||||||||||||    
T  35946825 ccaccaatggtggacgactaatccggctcgtgcgtagaggcatgcacaatggccaagcgtt 35946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 44945688 - 44945620
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||||||| |||| ||  |||||||| ||||||||||||||||||||| | |||  |||||||||    
T  44945688 tttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactatccaagcgtt 44945620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 41945579 - 41945502
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    |||| ||||||| ||  |||||||| || ||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  41945579 cgcaccgatttccgactcaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtta 41945502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 23658277 - 23658209
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||||||||||| ||||||||| ||||||||| |||||||||||   ||||||||||||||    
T  23658277 tttctgacccaccaaagatggacgactaatccggctcgtgtgtagaggcatgcacactggccaagcgtt 23658209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 26423306 - 26423366
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||| ||||||||||||||    
T  26423306 ccaccaaaggtgaacgactaatctggctcgtgcgtagaggcaggtgcactggccaagcgtt 26423366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 3353522 - 3353459
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    ||||||||||| ||||| || ||||||||| ||||||||||||||||||||| | |||||||||    
T  3353522 tttctgatccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaa 3353459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 17748385 - 17748461
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||| || ||| ||||| || ||||||||| |||||||| |||||||||||| | ||||||||||||||    
T  17748385 cgcatcggtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgtt 17748461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 21530838 - 21530782
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  21530838 ccaccaaaggtgagcgattaattcggctcgtgcgtagaggcatgtgcactgaccaag 21530782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 22993378 - 22993446
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||| ||| |||||||| ||| |||||||||||||||||   ||||||||||||||    
T  22993378 tttctgacccaccaaaggtgagcgactaatccggttcgtgcgtagaggcatgcacactggccaagcgtt 22993446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 32769035 - 32768983
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgt 268  Q
    |||| |||||||||||| |||||||||||| || |||||||||||||||||||    
T  32769035 tttccgatccaccaaaggtgaacgactaatccgactcgtgcgtagaggcatgt 32768983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 1797553 - 1797490
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||| |||||||| ||||||| | |||||||||||||||| |||| | ||||||||||||||    
T  1797553 gatccatcaaagatggacgactagtccggctcgtgcgtagagacatgcgcactggccaagcgtt 1797490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 30827369 - 30827326
Alignment:
Q  237 acgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  30827369 acgactaatccggctcgtgcgtagaggcatgcgtactggccaag 30827326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 43861988 - 43862051
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||| | ||||||||| ||||    
T  43861988 gatccaccaaaggtgaatgactaatccggctcatgcgtagaggcatgcgcactggccaaacgtt 43862051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 1606039 - 1605971
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||||| ||  |||||||| ||||||  || |||||||||||| ||||||||||||||    
T  1606039 tttccgatccaccaaaggtgggcgactaatccggctcaagcctagaggcatgtgcactggccaagcgtt 1605971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 13095948 - 13095892
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||| | ||||||||||    
T  13095948 ccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaag 13095892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 38578886 - 38578946
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| |||||| |||||||||||||| | ||||||||||||||    
T  38578886 ccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 38578946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 38988990 - 38988934
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||||||| |||||||| ||| || |||||||||||||||| |||| |||||    
T  38988990 ccaccaaagatgagcgactaatccggttcatgcgtagaggcatgtgcactgaccaag 38988934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 43346798 - 43346854
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||||||| |||||||| |||||||| |||||||||||| | || |||||||    
T  43346798 ccaccaaagatgagcgactaatccggctcgtacgtagaggcatgcgcaccggccaag 43346854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 47341982 - 47341910
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||| ||||||| || ||||||| | |||||||| ||| | ||||||||||||||||||| | ||||||||||    
T  47341982 cgcaccgatttccgacccaccaatggtgaacgaccaatcctgctcgtgcgtagaggcatgcgcactggccaag 47341910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 49142704 - 49142748
Alignment:
Q  240 actaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||    
T  49142704 actaatccggctcgtgcgtagaggcatgtgcactggctaagcgtt 49142748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 3603463 - 3603404
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    |||| ||||||| || ||||||||  ||||||| |||| |||||||||||||||||||||    
T  3603463 cgcaccgatttccgacccaccaaaagtgaacgattaatccggctcgtgcgtagaggcatg 3603404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 5039434 - 5039493
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||||||| ||| |||||||| |||||| |||||||||| ||||| |||| |||||    
T  5039434 gatccaccaaaggtgagcgactaatccggctcatgcgtagaggtatgtgcactgaccaag 5039493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 34659302 - 34659256
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| ||||||||||||||||||||| | ||||| ||||||||    
T  34659302 cgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgtt 34659256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 27875107 - 27875168
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    |||| |||| || ||||||||| || ||| |||||||||||||||| |||||||||| ||||    
T  27875107 ccactaaaggtggacgactaatgcgactcatgcgtagaggcatgtgcactggccaagtgtta 27875168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 28744252 - 28744195
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagc 281  Q
    ||||||||| || ||||||||| ||||||||  ||||||| ||| |||||||||||||    
T  28744252 ccaccaaaggtggacgactaatccggctcgtatgtagaggtatgcgtactggccaagc 28744195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 16802213 - 16802153
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| | ||| |||||||| ||||||||||||||||||||  | ||||||||| ||||    
T  16802213 ccaccaatggtgagcgactaatccggctcgtgcgtagaggcatacgcactggccaatcgtt 16802153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 22974065 - 22973997
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||| || |||||||||  ||||| |||||||| |||||   ||||||||||||||    
T  22974065 tttctgacccaccaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgtt 22973997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 48244372 - 48244416
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggca 265  Q
    |||||||||||| ||| |||||||| |||||| ||||||||||||    
T  48244372 gatccaccaaaggtgagcgactaatccggctcatgcgtagaggca 48244416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 48804773 - 48804717
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| | || ||||||||| |||||| |||||||||||||| | ||||||||||    
T  48804773 ccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaag 48804717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 19230578 - 19230638
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||||||||||||| |||||||||||||||||||||  ||||| |||||||||    
T  19230578 ccaccaatgatgaacgactaatccggctcgtgcgtagaggcatgcatactgaccaagcgtt 19230638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 9633644 - 9633704
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  9633644 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 9633704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 21898739 - 21898679
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| |||||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  21898739 ccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 21898679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 29444784 - 29444844
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||| || |||||| |||||| |||||||||||||| | ||||||||||||||    
T  29444784 ccaccaaagatggacaactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 29444844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 2271314 - 2271382
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||| ||||| || ||||||||| |||||||||||||||| |||| | |||||| |||||||    
T  2271314 tttctgacccatcaaaggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgtt 2271382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 3601175 - 3601115
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| ||||||||| ||| ||||||| | ||||||||||||||    
T  3601175 ccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgtt 3601115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 9366459 - 9366503
Alignment:
Q  241 ctaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||    
T  9366459 ctaatccggctcgtgcgtagaggcatgcgcactggccaagcgtta 9366503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 14326088 - 14326044
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgt 268  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||    
T  14326088 ccaccaaagatgagcgactaatccggctcatgcgtagaggcatgt 14326044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 14419098 - 14419054
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgt 268  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||    
T  14419098 ccaccaaagatgagcgactaatccggctcatgcgtagaggcatgt 14419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 12606520 - 12606461
Alignment:
Q  225 caccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| ||  |||||||| ||||||||||||||||||||| | ||||||||| ||||    
T  12606520 caccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacgtt 12606461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 14107391 - 14107437
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| |||||| |||||||||||||||| ||||| ||||||||    
T  14107391 cgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgtt 14107437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 29333160 - 29333218
Alignment:
Q  226 accaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| || |||||| ||||||||| |||||||||||||| | ||||||||| ||||    
T  29333160 accaaaggtggacgactgattcggctcatgcgtagaggcatgcgcactggccaaacgtt 29333218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 8149816 - 8149861
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtg 269  Q
    ||||||||| || |||||||||||||||  ||||||||||||||||    
T  8149816 ccaccaaaggtggacgactaattcggctaatgcgtagaggcatgtg 8149861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 13391363 - 13391322
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    |||||||| ||||||||||||||||||||| | |||||||||    
T  13391363 cgactaatccggctcgtgcgtagaggcatgcgcactggccaa 13391322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 3587956 - 3588024
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||| ||||| |  ||||||||| ||| || |||||||||| ||||| ||||||||||||||    
T  3587956 tttccgatccatcaaaggttgacgactaatccggttcatgcgtagaggtatgtgcactggccaagcgtt 3588024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 6606116 - 6606172
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| | || ||||||||| |||||| |||||||||||||||  ||||||||||    
T  6606116 ccaccaatggtggacgactaatccggctcatgcgtagaggcatgtacactggccaag 6606172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 19089589 - 19089533
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| |  ||||||||| |||||||||||||||||||||   ||||||||||    
T  19089589 ccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgctcactggccaag 19089533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 32157178 - 32157242
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||||||||||||||| | |||||||  ||||| |||||||||| ||| | ||||| ||||    
T  32157178 tttctgatccaccaaagatggatgactaatctggctcatgcgtagaggtatgcgcactggtcaag 32157242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 50371846 - 50371914
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||||||||  |||||||| ||||| ||||||||| ||||| ||||||||||||||||    
T  50371846 tttccgatccaccaaagatgggcgactaatccggcttgtgcgtagaagcatgcgtactggccaagcgtt 50371914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 38791617 - 38791690
Alignment:
Q  211 atcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||| ||||||| |||||||| |||||||||||||||| |||||||||||||| | ||| ||||| ||||    
T  38791617 atcggtttttgatccatcaaagatggacgactaattcggctcatgcgtagaggcatgcgcacttgccaatcgtt 38791690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 5855626 - 5855550
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||| || |||| |||| |||||||||||| || ||| |||||||||||||| | ||||||||||||||    
T  5855626 cgcatcggtttccgacccactaaaggtgaacgactaatccgcctcatgcgtagaggcatgcgcactggccaagcgtt 5855550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 17642024 - 17642080
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| || ||||||||| ||||||||||||||||||||| | ||||||||||    
T  17642024 ccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaag 17642080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 43959833 - 43959901
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||||||| |||| ||  |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  43959833 tttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 43959901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 32946 - 32899
Alignment:
Q  237 acgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||||    
T  32946 acgactaattcggctcatgcgtagaggcatgtgcactgaccaagcgtt 32899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 33498856 - 33498919
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||| ||||| || ||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  33498856 gatccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 33498919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 17092489 - 17092539
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcat 266  Q
    ||||||||| ||||||| || ||||||||| ||||||||||||||||||||    
T  17092489 tttctgatctaccaaaggtggacgactaatccggctcgtgcgtagaggcat 17092539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 33418137 - 33418195
Alignment:
Q  226 accaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| || ||||||||| |||||||||| |||||||||| | ||||||||||||||    
T  33418137 accaaaggtggacgactaatccggctcgtgcatagaggcatgcgcactggccaagcgtt 33418195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 12036756 - 12036821
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagc 281  Q
    |||| |||||||||||| || |||| ||||  |||||||||||||||||||| | |||||||||||    
T  12036756 tttccgatccaccaaaggtggacgattaatctggctcgtgcgtagaggcatgcgcactggccaagc 12036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 4581702 - 4581758
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| || ||||||| | ||||||||||||||||||||| | ||||||||||    
T  4581702 ccaccaaaggtggacgactattccggctcgtgcgtagaggcatgcgcactggccaag 4581758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 8764079 - 8764023
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| | || ||||||||| ||||||||||||||||||||| | ||||||||||    
T  8764079 ccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaag 8764023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 14254292 - 14254348
Alignment:
Q  228 caaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||| || ||||||||| |||||| |||||| ||||||| ||||||||||||||||    
T  14254292 caaaggtggacgactaatccggctcatgcgtaaaggcatgcgtactggccaagcgtt 14254348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 32142850 - 32142922
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| |||| || ||| ||||| ||| ||||||||||||||| |||||| ||||||| | ||||||||||    
T  32142850 cgcatcggtttccgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactggccaag 32142922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 37339908 - 37339848
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| |||||||||||| |||||||| | ||||||||||||||    
T  37339908 ccaccaaaggtgggcgactaatccggctcgtgcgttgaggcatgcgcactggccaagcgtt 37339848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 40288497 - 40288557
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||| |||||||| ||||||||| |||||||||||  |||||||||| ||||    
T  40288497 ccaccaaggatgagcgactaatccggctcgtgtgtagaggcatgcatactggccaaccgtt 40288557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 44969760 - 44969692
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||||||||| |||| ||||||||| |||||| ||||||| ||||||   ||||||||||||||    
T  44969760 tttccgatccaccaatgatggacgactaatccggctcatgcgtaggggcatgcacactggccaagcgtt 44969692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 10422874 - 10422820
Alignment:
Q  226 accaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| || ||||||||| |||||| |||||||||||||| | ||||||||||    
T  10422874 accaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaag 10422820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 21849239 - 21849285
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| ||||||||||||||||||||| | ||| ||||||||||    
T  21849239 cgactaatccggctcgtgcgtagaggcatgcgcactagccaagcgtt 21849285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 33004050 - 33004092
Alignment:
Q  239 gactaattcggctcgtgcgtagaggcatgtgtactggccaagc 281  Q
    ||||||| ||||||||||||||||||||| | |||||||||||    
T  33004050 gactaatccggctcgtgcgtagaggcatgcgcactggccaagc 33004092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 45726450 - 45726508
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    |||||||||||| |||||||||||| |||||| ||||||||| |||  | |||||||||    
T  45726450 gatccaccaaaggtgaacgactaatccggctcatgcgtagagacatacgcactggccaa 45726508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 49078192 - 49078146
Alignment:
Q  234 tgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||||||| |||||| |||||||||||||| | ||||||||||    
T  49078192 tgaacgactaatccggctcatgcgtagaggcatgcgcactggccaag 49078146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 15466066 - 15465993
Alignment:
Q  211 atcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| || ||||||||| ||| |||| |||  | |||||||||||||||||||| |||| |||||||||    
T  15466066 atcggtttccgacccaccaaaggtgagcgaccaatcagactcgtgcgtagaggcatgtgcactgaccaagcgtt 15465993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 34719864 - 34719803
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    ||||||||| ||| ||||||||  | |||||||||||||||||| | ||||| |||||||||    
T  34719864 ccaccaaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcactggtcaagcgtta 34719803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 35211192 - 35211249
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagc 281  Q
    ||||||||| || ||||||||||| |||| |||||||||||||| ||| |||| ||||    
T  35211192 ccaccaaaggtggacgactaattcagctcatgcgtagaggcatgcgtattggctaagc 35211249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 2567364 - 2567304
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||| ||| |||||  | |||||| ||||||||||| | ||||||||||||||    
T  2567364 ccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgtt 2567304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 2980935 - 2981007
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||| ||||||| || |||| ||| ||| ||||||||| || ||||||||||||||||||   ||||||||||    
T  2980935 cgcaccgatttccgacccactaaacatggacgactaatccgactcgtgcgtagaggcatgcacactggccaag 2981007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 6563505 - 6563469
Alignment:
Q  248 ggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  6563505 ggctcgtgcgtagagacatgtgcactggccaagcgtt 6563469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 10172991 - 10173051
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  ||| |||| |||||| |||||||||||||| | ||||||||||||||    
T  10172991 ccaccaaaggtgggcgagtaatccggctcatgcgtagaggcatgggcactggccaagcgtt 10173051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 16956554 - 16956494
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| |||  ||||||| ||||||||||||||||||||| | ||||| ||| ||||    
T  16956554 ccaccaaaggtgagtgactaatccggctcgtgcgtagaggcatgcgcactggtcaaacgtt 16956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 18915955 - 18915899
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| | ||| |||||||| |||||||||||||||||||||   ||||||||||    
T  18915955 ccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcacactggccaag 18915899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 30927739 - 30927807
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||||||||  || ||||||||| |||||| ||||||||||||||   | ||||||||||||    
T  30927739 tttctgacccaccaaaagtggacgactaatccggctcatgcgtagaggcatgcacattggccaagcgtt 30927807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 45361902 - 45361962
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| |||||||||||| |||||  ||||||| |||||| | ||||||||||||||    
T  45361902 ccactaaaggtgaacgactaatccggcttatgcgtagtggcatgcgcactggccaagcgtt 45361962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 6077 - 6002
Alignment:
Q  209 gcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||| |||| || ||||||| | || |||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  6077 gcatcggtttccgacccaccaatggtggacgactaattcgtctcatgcgtagaggcatgtgcactggccaagcgtt 6002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 186607 - 186552
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  186607 ccactaaagatgaacgactaatccggctcgtgcgtagaggcatgtgcactgaccaa 186552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 224407 - 224357
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactg 274  Q
    |||||||||||| ||||||||| ||||||||||||||||| ||||| ||||    
T  224407 ccaccaaagatggacgactaatccggctcgtgcgtagaggtatgtgcactg 224357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 7310707 - 7310766
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    ||||||| |||| || ||||||||||||| |||||||| |||||||||||||||||||||    
T  7310707 cgcatcggtttccgacccaccaaagatgagcgactaatccggctcgtgcgtagaggcatg 7310766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 10855457 - 10855411
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10855457 cgactaattcggttcgtgcgtagaggcatgcgtactggccaagcgtt 10855411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 49198452 - 49198382
Alignment:
Q  210 catcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||| ||||||||||||||| | || ||||||||| |||||| |||||||||||||| | ||||||||||    
T  49198452 catcggtttctgatccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaag 49198382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 47164201 - 47164152
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggca 265  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  47164201 tttccgatccaccaaagatgagcgactaatccggctcgtgcgtagaggca 47164152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 3507553 - 3507609
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||| | ||||||||||    
T  3507553 ccaccaaaggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggccaag 3507609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 28572231 - 28572291
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||  |||||||||||||||    
T  28572231 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcatactggccaagcgtt 28572291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 47749109 - 47749181
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| |||| || | ||||||| ||  |||||||||||||||||||||||||||||| | ||||||||||    
T  47749109 cgcatcggtttccgacctaccaaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcactggccaag 47749181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 54261313 - 54261253
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| |||| |||||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  54261313 ccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 54261253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 55069699 - 55069759
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||| ||| |||| ||||||||||||||||||||||| ||||||||| ||||    
T  55069699 ccaccaaaggtgagcgattaatccggctcgtgcgtagaggcatgtgcactggccaaacgtt 55069759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 8164651 - 8164580
Alignment:
Q  213 cgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| |||||||||||| ||  |||||||| || |||||||||| ||||||| | ||||||||||||||    
T  8164651 cgatttccgatccaccaaaggtgggcgactaatccgactcgtgcgtaaaggcatgcgcactggccaagcgtt 8164580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 35923640 - 35923703
Alignment:
Q  221 gatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||| | ||||||||| ||||    
T  35923640 gatccatcaaagatggacgactaattcgactcgtgcttagaggcatgcgcactggccaaacgtt 35923703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 45877531 - 45877485
Alignment:
Q  234 tgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||    
T  45877531 tgaacgactaatccggctcatgcgtagaggcatgtgcactggccaag 45877485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 47471934 - 47471861
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagc 281  Q
    ||||||| |||| || ||||||||| || |||||||||||||||| |||||||| ||||| | ||| |||||||    
T  47471934 cgcatcggtttccgacccaccaaaggtggacgactaattcggctcatgcgtagaagcatgcgcactagccaagc 47471861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 8362672 - 8362604
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||||||| |||| || |||||||||| ||||| |||||||||||||| | ||||||||| ||||    
T  8362672 tttcggatccactaaaggtggacgactaatttggctcatgcgtagaggcatgcggactggccaaacgtt 8362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 10040643 - 10040583
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||| | | ||||||||||||||||||||| | ||||||||||||||    
T  10040643 ccaccaaaggtggacgaccattccggctcgtgcgtagaggcatgcgcactggccaagcgtt 10040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 26043907 - 26043843
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||||||  |||||||| ||| |||||||| |||||| |||||||||||||| | ||||||||||    
T  26043907 tttctgactcaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaag 26043843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 48342115 - 48342047
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||| ||||||||||||||| |||||||||  || || |||||||||||||| | ||| ||||||||||    
T  48342115 tttccgatccaccaaagatggacgactaatctggttcatgcgtagaggcatgcgcactagccaagcgtt 48342047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 15320281 - 15320230
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    ||||||| ||||||||| ||  |||||||| |||||||||||||||||||||    
T  15320281 tttctgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatg 15320230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 50753361 - 50753404
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    ||||||| |||||||||||||| || ||||||||||||||||||    
T  50753361 ccaccaatgatgaacgactaatccgactcgtgcgtagaggcatg 50753404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 6462485 - 6462439
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||| |||||| |||||||||||||| | ||||||||||||||    
T  6462485 cgactaatccggctcatgcgtagaggcatgcgcactggccaagcgtt 6462439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 15795528 - 15795574
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    |||||||||| ||||||||||||||||||| | |||| |||||||||    
T  15795528 cgactaattcagctcgtgcgtagaggcatgcgcactgaccaagcgtt 15795574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 34662323 - 34662400
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtta 285  Q
    ||||||| ||||  |||||| |||| || |||||||||||||||| ||| ||||| |||| |||||| |||| |||||    
T  34662323 cgcatcggtttccaatccactaaaggtggacgactaattcggctcatgcatagagacatgcgtactgaccaaacgtta 34662400  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 49543592 - 49543563
Alignment:
Q  238 cgactaattcggctcgtgcgtagaggcatg 267  Q
    ||||||||||||||||||||||||||||||    
T  49543592 cgactaattcggctcgtgcgtagaggcatg 49543563  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 7650314 - 7650258
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||  |||||||| |||||||||||||||| |||  ||||||||||||    
T  7650314 ccaccaaaggtgggcgactaatccggctcgtgcgtagagacattcgtactggccaag 7650258  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 29128022 - 29127950
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||| |||| || ||||||||| ||  |||||||| |||||| |||||||||||||| | |||| |||||    
T  29128022 cgcatcggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactgaccaag 29127950  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 30767267 - 30767323
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||   ||||||||||    
T  30767267 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcacactggccaag 30767323  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 43330752 - 43330808
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||| | ||||| ||||    
T  43330752 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaag 43330808  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 47219227 - 47219171
Alignment:
Q  228 caaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||| || ||||||||| |||||| |||||||||||||| | ||| ||||||||||    
T  47219227 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgtt 47219171  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 53649822 - 53649758
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    |||| |||||| ||||| |||||||||||| |||||| ||||||||| || | | ||||||||||    
T  53649822 tttccgatccatcaaaggtgaacgactaatccggctcatgcgtagagacaggcgcactggccaag 53649758  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 250028 - 250099
Alignment:
Q  208 cgcatcgatttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaa 279  Q
    |||| ||||||| || |||||||||  || |||||||| ||||||||||||||||||||| | |||||||||    
T  250028 cgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagaggcatgcgcactggccaa 250099  T

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Target: scaffold0291 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 6945 - 6889
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaag 280  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||| | ||||||||||    
T  6945 ccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaag 6889  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 155730 - 155790
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||| | ||| ||||||||||    
T  155730 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactagccaagcgtt 155790  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 26260 - 26213
Alignment:
Q  237 acgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||||    
T  26260 acgactaatccggctcgtgcgtagaggcatgcacactggccaagcgtt 26213  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 41133 - 41091
Alignment:
Q  225 caccaaagatgaacgactaattcggctcgtgcgtagaggcatg 267  Q
    |||||||||||  |||||||| |||||||||||||||||||||    
T  41133 caccaaagatgggcgactaatccggctcgtgcgtagaggcatg 41091  T

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Target: scaffold0376 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 12768 - 12700
Alignment:
Q  216 tttctgatccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||| ||| ||||| ||  |||||||| ||| |||||||||||||||||   ||||||||||||||    
T  12768 tttctgacccatcaaaggtgggcgactaatccggttcgtgcgtagaggcatgcacactggccaagcgtt 12700  T

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Target: scaffold0341 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 18698 - 18662
Alignment:
Q  248 ggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  18698 ggctcgtgcgtagagacatgtgcactggccaagcgtt 18662  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 8720 - 8780
Alignment:
Q  224 ccaccaaagatgaacgactaattcggctcgtgcgtagaggcatgtgtactggccaagcgtt 284  Q
    ||||||||| || ||||||||| | |||| |||||||||||| | | ||||||||||||||    
T  8720 ccaccaaaggtggacgactaatccagctcatgcgtagaggcaagcgcactggccaagcgtt 8780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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