View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16829_high_11 (Length: 291)
Name: NF16829_high_11
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16829_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 22138769 - 22139033
Alignment:
| Q |
10 |
atgaatcaggactgaaaagagttgcagtatttacacattcagaaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138769 |
atgaatcaggactgaaaagagttgcagtatttacacattcagaaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
22138868 |
T |
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| Q |
110 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgtctgtgtcttgtagaagtaagactataga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138869 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgtctgtgtcttgtagaagtaagactataga |
22138968 |
T |
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| Q |
210 |
tgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
274 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138969 |
tgagtggtgtaaatcctttaaaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
22139033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 21987289 - 21987553
Alignment:
| Q |
10 |
atgaatcaggactgaaaagagttgcagtatttacacattcagaaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21987289 |
atgaatcaggactgaaaagagttgcagtatttacacattcagtaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
21987388 |
T |
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| Q |
110 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgtctgtgtcttgtagaagtaagactataga |
209 |
Q |
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| T |
21987389 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtttctgtgtcttgtagaagtaagactataga |
21987488 |
T |
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| Q |
210 |
tgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
274 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21987489 |
tgagtggtgtaaatcctttaaaatcagtaacttgtgtaacagaaggatttttagccactaatgct |
21987553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 21964853 - 21965117
Alignment:
| Q |
10 |
atgaatcaggactgaaaagagttgcagtatttacacattcagaaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21964853 |
atgaatcaggactgaaaagagttgcagtatttacacattcagtaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
21964952 |
T |
|
| Q |
110 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgtctgtgtcttgtagaagtaagactataga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
21964953 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagataccaaaccatgtctctgtgtcttgtagaagtaagactataga |
21965052 |
T |
|
| Q |
210 |
tgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
274 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21965053 |
tgagtggtgtaaatcctttaaaatcagtaacttgtgtaacagaaggatttttagccactaatgct |
21965117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 18941732 - 18941471
Alignment:
| Q |
10 |
atgaatcaggactgaaaagagttgcagtatttacacattcagaaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18941732 |
atgaatcaggactgaaaagagttgcagtatttacacattcagcaaataattttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgacta |
18941633 |
T |
|
| Q |
110 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgtctgtgtcttgtagaagtaagactataga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
18941632 |
gcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcgttaaaagataccaaaccatgtccctgtgtcttgtagaagtaagactataga |
18941533 |
T |
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| Q |
210 |
tgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaat |
271 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
18941532 |
tgagtggtgtaaatcctttaaaatcagtaacttgtgtaacagaagtatttttagccactaat |
18941471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 21745299 - 21745484
Alignment:
| Q |
89 |
agcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgtctgtgtc |
188 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||| | ||||||| |||||||| |||||||| |||||||| | |||||||| | | || |
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| T |
21745299 |
agcaaagcaacaagttgactagcagaggaaccagagaatggtctgccaggtccatcatctgtagtattcataaaaagatatcgaaccatgtctttacatc |
21745398 |
T |
|
| Q |
189 |
ttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
274 |
Q |
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|||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21745399 |
ttgtagaagtgacactatagatgagtggtgtgaatcctttaaaatcagtaacttgtgtaagagaaggatttttagccaccaatgct |
21745484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 60 - 257
Target Start/End: Complemental strand, 39749982 - 39749785
Alignment:
| Q |
60 |
tttaattaccgtgaaatccagaggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcat |
159 |
Q |
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|||||||||| |||||||| | |||||| ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||| || ||| ||| |
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| T |
39749982 |
tttaattaccatgaaatccggcggcagtaagcaaagcaacaagttgactagctgagggaccagagaatggacagccaggtctctcatcagtagtactcaa |
39749883 |
T |
|
| Q |
160 |
taaaagatacctaaccatgtgtctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggat |
257 |
Q |
| |
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| |||||||| |||||||| | ||||||||| |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
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| T |
39749882 |
aacaagataccaaaccatgtccttacatcttgtagaggtaatactatagatgagtggtgtgaatcctttaaaatcagttacttgtgtaagagaaggat |
39749785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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