View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16829_high_15 (Length: 248)

Name: NF16829_high_15
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16829_high_15
NF16829_high_15
[»] chr2 (11 HSPs)
chr2 (11-87)||(28741301-28741377)
chr2 (12-133)||(19616340-19616461)
chr2 (183-233)||(28741543-28741593)
chr2 (12-129)||(15342279-15342397)
chr2 (196-233)||(28733364-28733401)
chr2 (49-132)||(21626586-21626670)
chr2 (189-231)||(28670874-28670916)
chr2 (12-79)||(28719057-28719124)
chr2 (149-184)||(28741387-28741422)
chr2 (11-86)||(29800419-29800494)
chr2 (190-228)||(28717704-28717742)
[»] chr4 (4 HSPs)
chr4 (12-133)||(30040750-30040872)
chr4 (12-129)||(11420924-11421042)
chr4 (49-133)||(19365423-19365508)
chr4 (26-117)||(9537881-9537973)
[»] chr6 (6 HSPs)
chr6 (49-115)||(23846700-23846767)
chr6 (12-133)||(20736604-20736726)
chr6 (12-133)||(21994492-21994614)
chr6 (19-133)||(4073480-4073595)
chr6 (12-133)||(8612820-8612941)
chr6 (12-85)||(22560460-22560533)
[»] scaffold0466 (1 HSPs)
scaffold0466 (12-129)||(13225-13343)
[»] scaffold0136 (1 HSPs)
scaffold0136 (11-132)||(8636-8758)
[»] chr7 (11 HSPs)
chr7 (12-133)||(3587813-3587935)
chr7 (14-132)||(15170307-15170428)
chr7 (12-133)||(19393700-19393822)
chr7 (12-133)||(28130465-28130587)
chr7 (49-133)||(18259437-18259522)
chr7 (12-133)||(47167135-47167257)
chr7 (49-133)||(2935935-2936020)
chr7 (44-120)||(19388469-19388546)
chr7 (49-117)||(31190756-31190825)
chr7 (12-133)||(15999886-16000008)
chr7 (12-133)||(24443603-24443724)
[»] chr3 (4 HSPs)
chr3 (14-133)||(15526658-15526777)
chr3 (14-133)||(11787491-11787611)
chr3 (14-133)||(25979006-25979126)
chr3 (63-133)||(28088120-28088192)
[»] chr5 (10 HSPs)
chr5 (11-133)||(20100518-20100641)
chr5 (12-133)||(7865710-7865831)
chr5 (12-133)||(12765270-12765391)
chr5 (12-133)||(5097555-5097677)
chr5 (12-133)||(12704154-12704275)
chr5 (12-133)||(39535368-39535490)
chr5 (12-133)||(9812013-9812134)
chr5 (12-132)||(31652060-31652181)
chr5 (11-133)||(26245006-26245129)
chr5 (49-133)||(26130006-26130091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (12-132)||(83291-83412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (13-133)||(40265-40386)
[»] scaffold0376 (1 HSPs)
scaffold0376 (12-133)||(11806-11927)
[»] scaffold0063 (1 HSPs)
scaffold0063 (14-133)||(45226-45346)
[»] scaffold0086 (1 HSPs)
scaffold0086 (12-120)||(53682-53791)
[»] chr1 (2 HSPs)
chr1 (49-133)||(8727568-8727653)
chr1 (12-131)||(633840-633960)
[»] chr8 (3 HSPs)
chr8 (14-133)||(18835254-18835374)
chr8 (12-133)||(22659770-22659894)
chr8 (11-133)||(20539672-20539798)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 28741301 - 28741377
Alignment:
Q  11 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatt 87  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741301 atcatcagtctacatacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatt 28741377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 19616461 - 19616340
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| || | ||||||||||||| ||||||||| ||||||| | |||  ||||||||||||||| ||||||||    
T  19616461 tcatcagtctacatacataatagtctcgacgcttat-tattatcccaattcatattaaagcttgactacaaatacatttaagaatagtgttctttatgtt 19616363  T
Q  111 aatgtaatcttataattaagtca 133  Q
    ||||||||||||| |||||||||    
T  19616362 aatgtaatcttatgattaagtca 19616340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 28741543 - 28741593
Alignment:
Q  183 aactgtatctctcaaaacaggatcatcatggattcctggtaaatcaattct 233  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28741543 aactgtatctctcaaaacaagatcatcatggattcctggtaaatcaattct 28741593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 15342279 - 15342397
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    |||||| |||||| |||||||||||   ||| |||  ||||||||||||||||||||||  ||||||| | |||  || |||||||||||| |||||| |    
T  15342279 tcatcaatctacatacataatagtctccacgctttattattatcccaatttatattaaatcttgactacatatacattaaagaatagtgttctttatggt 15342378  T
Q  111 aatgtaatcttataattaa 129  Q
    |||||||||| || |||||    
T  15342379 aatgtaatctcatgattaa 15342397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 28733364 - 28733401
Alignment:
Q  196 aaaacaggatcatcatggattcctggtaaatcaattct 233  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28733364 aaaacaggatcatcatggattcctggtaaatcaattct 28733401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 21626670 - 21626586
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtc 132  Q
    |||||||||| ||||||||||| |||||||   |||| ||||||||||| |||| |||||||||||||||| | || ||||||||    
T  21626670 tattatcccattttatattaaaatttgacttcggatacttttaagaatattgttctttatgttaatgtaatgtcatgattaagtc 21626586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 28670874 - 28670916
Alignment:
Q  189 atctctcaaaacaggatcatcatggattcctggtaaatcaatt 231  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  28670874 atctctcaaaacaggatcatcatggattcctgttaagtcaatt 28670916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 28719057 - 28719124
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgacta 79  Q
    ||||||||||||| |||||||||||  ||||||||  ||||||| ||||||||| ||||  |||||||    
T  28719057 tcatcagtctacatacataatagtctctacgttttattattatctcaatttatactaaaacttgacta 28719124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 28741387 - 28741422
Alignment:
Q  149 actatctctttattaatcttacaacaagcataataa 184  Q
    |||||||||||||||||||||||||||| |||||||    
T  28741387 actatctctttattaatcttacaacaagtataataa 28741422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 29800494 - 29800419
Alignment:
Q  11 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatat 86  Q
    |||||||||||||| |||||||||||  | || |||  |||||||||||||| |||||||| |||| |||| ||||    
T  29800494 atcatcagtctacatacataatagtctttccgctttattattatcccaatttgtattaaagcttgaatatatatat 29800419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 28717704 - 28717742
Alignment:
Q  190 tctctcaaaacaggatcatcatggattcctggtaaatca 228  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  28717704 tctctcaaaacaggaccatcatggattcctagtaaatca 28717742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 30040750 - 30040872
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||| | |||||||||||   | | |||  ||||||||||||| ||||||| | |||||||||||||  ||||||||||||||| ||||||||    
T  30040750 tcatcagtctatatacataatagtctcgatgctttattattatcccaattcatattaacgcttgactatagatacatttaagaatagtgttctttatgtt 30040849  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  30040850 aatgtaatctcatgattaagtca 30040872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 11421042 - 11420924
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   | | |||  |||||||| |||| |||||||||||||||||  ||||  ||||||||||| ||| ||||||||    
T  11421042 tcatcagtctacatacataatagtctcgaagctttattattatcctaattcatattaaagtttgactacggatacatttaagaatagcgttctttatgtt 11420943  T
Q  111 aatgtaatcttataattaa 129  Q
    |||||||||| || |||||    
T  11420942 aatgtaatctaatgattaa 11420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 19365508 - 19365423
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 133  Q
    ||||| ||||||||||||||||| |||||||  ||||  ||||||||||| ||| |||| ||||||||||||| || |||||||||    
T  19365508 tattaccccaatttatattaaagcttgactacggatacatttaagaatagcgttctttacgttaatgtaatctcatgattaagtca 19365423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 9537973 - 9537881
Alignment:
Q  26 acataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 117  Q
    ||||||||||| || ||||||  | ||||||||| ||||||||||  ||||||| | |||  ||||||||||| ||| |||||||||||||||    
T  9537973 acataatagtctatgcgttttattgttatcccaaattatattaaatattgactacatatacatttaagaatagcgttctttatgttaatgtaa 9537881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 23846700 - 23846767
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgt 115  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||    
T  23846700 tattatcccaatttatattaaagtttgactacagatacttttaagaatagtgttctttatgtaaatgt 23846767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 20736604 - 20736726
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||||| ||  |||||||| ||||||| |||||  |||||||||| |||| ||||||||    
T  20736604 tcatcagtctacatacataatagtctcgacgctttattattatcccagttcttattaaagcttgactacagatacatttaagaataatgttctttatgtt 20736703  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  20736704 aatgtaatctcatgattaagtca 20736726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 21994614 - 21994492
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| | |||||||||  | || |||  |||||| |||||||||||||||| | |||||| ||||  ||||||||||||||| ||||| ||    
T  21994614 tcatcagtctacatatataatagtctttgcgctttattattattccaatttatattaaagctcgactatggatacatttaagaatagtgttctttatatt 21994515  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  21994514 aatgtaatctcatgattaagtca 21994492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 4073595 - 4073480
Alignment:
Q  19 tctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 117  Q
    |||||| |||||||||||  ||||||||  ||||||||  |||||||||||||||||||||  |||| ||||||||||| |||| |||   |||||||||    
T  4073595 tctacaaacataatagtctctacgttttattattatcctgatttatattaaagtttgactacggatacttttaagaataatgttctttccattaatgtaa 4073496  T
Q  118 tcttataattaagtca 133  Q
    ||| || |||||||||    
T  4073495 tctcatgattaagtca 4073480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 8612941 - 8612820
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  8612941 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 8612843  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  8612842 aatgtaatctcatgattaagtca 8612820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 22560460 - 22560533
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagata 85  Q
    ||||| |||||||  ||||||||||  | || |||  ||||||||||||||||||||||| |||||||| ||||    
T  22560460 tcatcggtctacatgcataatagtctctgcgctttattattatcccaatttatattaaagcttgactatggata 22560533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 13225 - 13343
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 110  Q
    ||||| ||||||| |||||||||||   ||| |||  ||||||||||||| ||||||||| |||||||| ||||  |||||||||| || ||||||||||    
T  13225 tcatcggtctacatacataatagtctcgacgctttattattatcccaattaatattaaagcttgactatggatacatttaagaatactgttttttatgtt 13324  T
Q  111 aatgtaatcttataattaa 129  Q
    |||||||||| || |||||    
T  13325 aatgtaatctcatgattaa 13343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 8758 - 8636
Alignment:
Q  11 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgt 109  Q
    ||||||| |||||| ||||| |||||  |||| |||  || |||| ||||||||||||||  ||||||| | ||| |||||||||||||||| |||||||    
T  8758 atcatcaatctacatacatattagtctctacgctttattactatctcaatttatattaaaacttgactacaaatacttttaagaatagtgttctttatgt 8659  T
Q  110 taatgtaatcttataattaagtc 132  Q
    ||||||||||| || ||||||||    
T  8658 taatgtaatctcatgattaagtc 8636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 3587935 - 3587813
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 110  Q
    ||||| ||||| | |||||||||||  |||| |||  ||||||||||||||||||||||| ||||||||||||   ||||||||||  | ||||||||||    
T  3587935 tcatcggtctatatacataatagtctctacgctttattattatcccaatttatattaaagcttgactatagattcatttaagaataacgttttttatgtt 3587836  T
Q  111 aatgtaatcttataattaagtca 133  Q
    || ||||||| || |||||||||    
T  3587835 aaagtaatctcatgattaagtca 3587813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 15170307 - 15170428
Alignment:
Q  14 atcagtctacacacataatagtcaatacgtttttatattatcccaatt--tatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 110  Q
    ||||||||||| | |||||||||  |||| |||  |||||||||||||  |||||||||| ||||||| | |||| ||||||||||  | ||||||||||    
T  15170307 atcagtctacatatataatagtctctacgctttattattatcccaatttatatattaaagcttgactacaaatatatttaagaataacgttttttatgtt 15170406  T
Q  111 aatgtaatcttataattaagtc 132  Q
    |||||||||| || ||||||||    
T  15170407 aatgtaatctcatgattaagtc 15170428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 19393700 - 19393822
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    |||| |||||||| |||||||||||   ||| |||   |||||||||| | ||||||||| ||||||| |||||  |||||||||||  || ||||||||    
T  19393700 tcattagtctacatacataatagtctcgacgctttataattatcccaactcatattaaagcttgactacagatacatttaagaatagcattctttatgtt 19393799  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  19393800 aatgtaatctcatgattaagtca 19393822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 28130587 - 28130465
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 110  Q
    |||||||||||||  ||||||||||   ||| |||  ||||||||  ||| ||||||||| ||||||| |||||  ||||||||||| | |||||||| |    
T  28130587 tcatcagtctacatgcataatagtctcgacgctttattattatccttattcatattaaagcttgactacagatacatttaagaatagcgttttttatgat 28130488  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  28130487 aatgtaatctcatgattaagtca 28130465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 18259437 - 18259522
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 133  Q
    |||||||| |||| ||||||||| |||||||| ||||  |||||||||| |||| |||||| ||||||||||| || |||||||||    
T  18259437 tattatcctaattcatattaaagcttgactatggatacatttaagaataatgttctttatgataatgtaatctcatgattaagtca 18259522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 47167135 - 47167257
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| ||||||| | |||  ||||||||||  ||| |||||| |    
T  47167135 tcatcagtctacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacaaatacatttaagaataacgttctttatgat 47167234  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || || ||||||    
T  47167235 aatgtaatctcatgataaagtca 47167257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 2936020 - 2935935
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 133  Q
    ||||||| ||||| ||||||||| |||||||  ||||  ||||||||||  ||| |||||||||||||||||| || |||||||||    
T  2936020 tattatcgcaattcatattaaagcttgactacggatacatttaagaataacgttctttatgttaatgtaatctcatgattaagtca 2935935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 19388546 - 19388469
Alignment:
Q  44 ttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatct 120  Q
    |||| ||||||||||||||||||| ||| ||||||| ||||| | |||| ||||||||| ||||| || |||||||||    
T  19388546 ttttttattatcccaatttatatttaagcttgactacagatactattaaaaatagtgttctttatattgatgtaatct 19388469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 31190756 - 31190825
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 117  Q
    ||||||||||||||||| ||||| |||||||  ||||| ||||| |||| |||| |||||||||||||||    
T  31190756 tattatcccaatttatactaaagcttgactaaggatatatttaataataatgttatttatgttaatgtaa 31190825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 16000008 - 15999886
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    |||||||||| || |||||| ||||   ||| |||  |||||||| |||| |||||||||||||||||  ||||  ||||| ||||| ||| |||| | |    
T  16000008 tcatcagtctgcatacataaaagtctcgacgctttattattatcctaattcatattaaagtttgactaaggatacatttaataatagcgttctttaaggt 15999909  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  15999908 aatgtaatctcatgattaagtca 15999886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 24443603 - 24443724
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||  |||  |||  ||| ||||| ||||||||||||| ||| |||  ||||  ||||||||||  ||| ||||||||    
T  24443603 tcatcagtctacatacataatagtctttacactttgttatcatccc-atttatattaaagcttggctacggatacatttaagaatatcgttctttatgtt 24443701  T
Q  111 aatgtaatcttataattaagtca 133  Q
    ||||||||||  | |||||||||    
T  24443702 aatgtaatctcgtgattaagtca 24443724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 15526777 - 15526658
Alignment:
Q  14 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 112  Q
    ||||||||||| |||||||||||  |||| |||  ||||||| || |||||||||||| ||||||| | ||   ||||||||||||||| ||||||||||    
T  15526777 atcagtctacaaacataatagtctctacgctttattattatctca-tttatattaaagcttgactacatatgcatttaagaatagtgttctttatgttaa 15526679  T
Q  113 tgtaatcttataattaagtca 133  Q
    |||||||| || |||||||||    
T  15526678 tgtaatctcatgattaagtca 15526658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 11787611 - 11787491
Alignment:
Q  14 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 112  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| ||||||| |||||  ||||||||||  ||| |||||| |||    
T  11787611 atcagtcaacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacagatacatttaagaataacgttctttatgataa 11787512  T
Q  113 tgtaatcttataattaagtca 133  Q
    |||||||| || |||||||||    
T  11787511 tgtaatctcatgattaagtca 11787491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 25979006 - 25979126
Alignment:
Q  14 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 112  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||| ||| |||||| |||    
T  25979006 atcagtcaacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacggatacatttaagaatagcgttctttatgataa 25979105  T
Q  113 tgtaatcttataattaagtca 133  Q
    |||||||| || |||||||||    
T  25979106 tgtaatctcatgattaagtca 25979126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 28088192 - 28088120
Alignment:
Q  63 atattaaag-tttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 133  Q
    ||||||||| ||||||||  ||| | ||||||||||||||| |||||| ||||||||||| || |||||||||    
T  28088192 atattaaagctttgactacggatctatttaagaatagtgttctttatgataatgtaatctcatgattaagtca 28088120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 20100518 - 20100641
Alignment:
Q  11 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgt 109  Q
    |||||||||||||| |||||||||||   ||| |||  |||||||||||||||||||||||||| ||||   |||  ||||||||||  ||| |||| ||    
T  20100518 atcatcagtctacatacataatagtcgtgacgctttattattatcccaatttatattaaagtttaactacgaatacatttaagaataacgttatttacgt 20100617  T
Q  110 taatgtaatcttataattaagtca 133  Q
    ||||||||||| || |||||||||    
T  20100618 taatgtaatctcatgattaagtca 20100641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 7865710 - 7865831
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  7865710 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 7865808  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  7865809 aatgtaatctcatgattaagtca 7865831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 12765270 - 12765391
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  12765270 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 12765368  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  12765369 aatgtaatctcatgattaagtca 12765391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 5097677 - 5097555
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||  ||||||| | |||  ||||||||||  ||| ||||||||    
T  5097677 tcatcagtctacatacataatagtctcgacgctttattattatcctaattcatattaaaacttgactacaaatacatttaagaataacgttctttatgtt 5097578  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  5097577 aatgtaatctcatgattaagtca 5097555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 12704154 - 12704275
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| ||||| |||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  12704154 tcatcagtctacatacatagtagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 12704252  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  12704253 aatgtaatctcatgattaagtca 12704275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 39535490 - 39535368
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||||||| |||||||||||||| ||  ||||  ||||||||||  ||| |||| | |    
T  39535490 tcatcagtctacatacataatagtcttgacgctttattattatcccaattcatattaaagtttgagtacggatacatttaagaatatcgttctttaaggt 39535391  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  39535390 aatgtaatctcatgattaagtca 39535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 9812013 - 9812134
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| ||||| |||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||| ||||||||| |||||| |    
T  9812013 tcatcagtctacatacatagtagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaataatagtgttctttatgat 9812111  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  9812112 aatgtaatctcatgattaagtca 9812134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 31652060 - 31652181
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| ||||| |||||  || |||||  |||| || ||||||||| ||||| | ||| || || | ||||||||||| | || ||||||||    
T  31652060 tcatcagtctacatacatagtagtctctatgttttactattgtctcaatttataataaagctcgaccatggaaacttttaagaataatattctttatgtt 31652159  T
Q  111 aatgtaatcttataattaagtc 132  Q
    ||||||||||||  ||||||||    
T  31652160 aatgtaatcttacgattaagtc 31652181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 26245129 - 26245006
Alignment:
Q  11 atcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgt 109  Q
    |||||||||||||| |||||||||||   ||| |||  ||||||||  ||| ||||||||| |||| || |||||  ||||||||||   || ||||||     
T  26245129 atcatcagtctacatacataatagtctcgacgctttattattatccttattcatattaaagcttgattacagatacatttaagaataacattctttatga 26245030  T
Q  110 taatgtaatcttataattaagtca 133  Q
    ||||||||||| || |||||||||    
T  26245029 taatgtaatctcatgattaagtca 26245006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 26130006 - 26130091
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 133  Q
    ||||||||||||||||||||||| |||||||  ||||  |||||||| || ||| || ||||||| ||||| |||  |||||||||    
T  26130006 tattatcccaatttatattaaagcttgactacggatacatttaagaagagcgttcttaatgttaaagtaatattaggattaagtca 26130091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 83291 - 83412
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| ||||||||||| ||||  |||  ||||||| |||||||||||||| || |||||  |||| ||||||||||||| || ||| |||     
T  83291 tcatcagtctacatacataatagtctatacactttattattatctcaatttatattaaatttcgactacggatacttttaagaatagtattctttgtgtg 83390  T
Q  111 aatgtaatcttataattaagtc 132  Q
    ||| |||||| | |||||||||    
T  83391 aatttaatctcacaattaagtc 83412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 40265 - 40386
Alignment:
Q  13 catcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtta 111  Q
    |||||||||||| |||||||||||    || |||  ||||||| ||||||||||||||| |||||||| ||||  ||||||||||| ||| |||| ||||    
T  40265 catcagtctacatacataatagtctcggcgctttattattatctcaatttatattaaagcttgactatggatacatttaagaatagcgttctttacgtta 40364  T
Q  112 atgtaatcttataattaagtca 133  Q
    ||||| ||| || |||||||||    
T  40365 atgtattctcatgattaagtca 40386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 11806 - 11927
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    |||||| |||||| ||||||||||    ||| |||  |||||||| |||| ||||||||| ||||||| |||||  ||||||||||||||| |||||| |    
T  11806 tcatcaatctacatacataatagtttcgacgctttattattatcctaatt-atattaaagattgactacagatacatttaagaatagtgttctttatgat 11904  T
Q  111 aatgtaatcttataattaagtca 133  Q
    |||||||||| || |||||||||    
T  11905 aatgtaatctcatgattaagtca 11927  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 45226 - 45346
Alignment:
Q  14 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 112  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||| ||| |||||| |||    
T  45226 atcagtcaacatacataatagtctcgacgctttattattatcctaattaatattaaagcttgactacggatacatttaagaatagcgttctttatgataa 45325  T
Q  113 tgtaatcttataattaagtca 133  Q
    |||||||| || |||||||||    
T  45326 tgtaatctcatgattaagtca 45346  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 53791 - 53682
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    |||||| |||||| |||||||||||   ||  |||  |||||||| |||| ||||||||| |||| ||  ||||  ||||||||||||||| ||||||||    
T  53791 tcatcaatctacatacataatagtcttgacactttattattatcctaattcatattaaagcttgaatacggatacatttaagaatagtgttctttatgtt 53692  T
Q  111 aatgtaatct 120  Q
    ||||||||||    
T  53691 aatgtaatct 53682  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 8727653 - 8727568
Alignment:
Q  49 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 133  Q
    ||||||| ||||| ||||||||||||||||| |||||  ||| ||||||  ||| |||||||||| |||||||||| ||| |||||    
T  8727653 tattatctcaattcatattaaagtttgactacagatagatttcagaataacgttctttatgttaaagtaatcttatgatttagtca 8727568  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 633960 - 633840
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 110  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||  ||| ||||||||| |||||||  ||||  ||||| |||| |||| |||||| |    
T  633960 tcatcagtctacatacataatagtctcgacgctttgttattatccttattcatattaaagcttgactacggatacatttaaaaataatgttctttatgat 633861  T
Q  111 aatgtaatcttataattaagt 131  Q
    ||| |||||| || |||||||    
T  633860 aatttaatctcatgattaagt 633840  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 18835374 - 18835254
Alignment:
Q  14 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgttttt-atgttaa 112  Q
    ||||||||||| |||||||||||   | | |||  ||||||  ||||  ||||||||| | ||||| |||||| ||||||||||  |||||| |||||||    
T  18835374 atcagtctacatacataatagtctcgatgctttattattatttcaatccatattaaagctggactacagatatatttaagaataacgttttttatgttaa 18835275  T
Q  113 tgtaatcttataattaagtca 133  Q
    |||||||| || |||||||||    
T  18835274 tgtaatctcatgattaagtca 18835254  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 22659770 - 22659894
Alignment:
Q  12 tcatcagtctacacacataatagtcaatacgtttttatattatccca-atttatattaaag-tttgactatagatatttttaagaatagtgtt-tttatg 108  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||   ||| ||||||||| ||||||||  ||||  ||||||||||||||| ||||||    
T  22659770 tcatcagtctacatacataatagtcttgacgctttattattatcctttattcatattaaagctttgactacggatacatttaagaatagtgttctttatg 22659869  T
Q  109 ttaatgtaatcttataattaagtca 133  Q
     ||||||||||| || |||||||||    
T  22659870 ataatgtaatctcatgattaagtca 22659894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 20539672 - 20539798
Alignment:
Q  11 atcatcagtctacacacataatagtcaatacg--ttttta-tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-ttta 106  Q
    |||||||||||||| ||||||| ||| || ||  || ||| ||||||||||||||| ||||||| || |||| | || | ||||||||||  ||| ||||    
T  20539672 atcatcagtctacatacataatcgtctatgcgctttattattattatcccaatttacattaaagctttactacaaatgtatttaagaataacgttcttta 20539771  T
Q  107 tgttaatgtaatcttataattaagtca 133  Q
    |||||||||||||  || |||||||||    
T  20539772 tgttaatgtaatcacatgattaagtca 20539798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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