View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16829_high_5 (Length: 356)
Name: NF16829_high_5
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16829_high_5 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 53 - 356
Target Start/End: Complemental strand, 154021 - 153718
Alignment:
| Q |
53 |
agtcgactgaagttgtaacaagtgatgataacaatccgctgcagttggtctttgttctggattctgttccatacaccaattctgtaactctcttaacatc |
152 |
Q |
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| T |
154021 |
agtcgactgaagttgtaacaagtgatgataacaatccgctgcagttggtctttgttctggattctgttccatacaccaattctgtaactctcttaacatc |
153922 |
T |
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| Q |
153 |
tttggcacattcaccaacccacatgtcattatcaaatacccaacactccatacatctactttcacaccatgtaatccacgctccatttctggcgcgtgtc |
252 |
Q |
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| T |
153921 |
tttggcacattcaccaacccacatgtcattatcaaatacccaacactccacacatcaactttcacaccatgcaatccacgctccatttctggcgcgtgtc |
153822 |
T |
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| Q |
253 |
ttccacgctccaccataccaccttcatgattctcctttacatatttccctaactccggcgcaccggccgcttcgtcgaaaccactcacaaaccattctcc |
352 |
Q |
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| T |
153821 |
ttccacgctccaccataccaccttcatgattatcctttacatatttccctagctccggcgctccggccgcttcgtcgaaaccactcacaaaccattctcc |
153722 |
T |
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| Q |
353 |
tcct |
356 |
Q |
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|||| |
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| T |
153721 |
tcct |
153718 |
T |
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