View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16829_high_6 (Length: 350)
Name: NF16829_high_6
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16829_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 5663447 - 5663724
Alignment:
| Q |
2 |
attttttggaatgctattctgtttccattgtcatgtttgcttctttaactatgttaagttgatttgttgcagctgaagtggattggtctgctattactac |
101 |
Q |
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| T |
5663447 |
attttttggaatgctattctgtttccattgtcatgtttgcttctttaactatgtcaagttgatttgttgcagctgaagtggattggtctgctattactac |
5663546 |
T |
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| Q |
102 |
gggtggcgatgaaaggacgttggagtttgctagacttaaaatttttacgtttggcattgagtagaatcaaaaacaggtttattctattgtccttgattta |
201 |
Q |
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| T |
5663547 |
gggtggcgatgaaaggacgttggagtttgctagacttaaaatttttacgtttggcattgagtagaatcaaaaacaggtttattctattgtccttgattta |
5663646 |
T |
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| Q |
202 |
tttctaatggtttttatgctactgttgttgtcattttttatcaatgcagtcaattttcaatagagctgcttctgtata |
279 |
Q |
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| T |
5663647 |
tttctaatggtttttatgctactgttgttgtcattttttatcaatgcagtcaattttcaatagagctgcttctgtata |
5663724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 35607918 - 35608080
Alignment:
| Q |
60 |
ttgatttgttgcagctgaagtggattggtctgctattactacgggtggcgatgaaaggacgttggagtttgctagacttaaaatttttacgtttggcatt |
159 |
Q |
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||||||| ||||||||||||| |||||| |||||||| | |||| | |||||||| ||||||| |||||||||| ||| ||| ||| ||| ||||| |
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| T |
35607918 |
ttgattttttgcagctgaagtagattggcctgctattgtt---ggtgaccatgaaaggcagttggagcttgctagactgaaattttgtactttttgcatt |
35608014 |
T |
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| Q |
160 |
gagtagaatcaaaaacaggtttattctattgtccttga-tttatttctaatggtttttatgctact |
224 |
Q |
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| T |
35608015 |
gagtacaatccaaaacaggtttaacctatggtccttgattttttttatgatagtttttatgctact |
35608080 |
T |
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