View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16829_high_9 (Length: 303)

Name: NF16829_high_9
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16829_high_9
NF16829_high_9
[»] chr7 (1 HSPs)
chr7 (2-284)||(441027-441309)
[»] chr8 (2 HSPs)
chr8 (83-257)||(44989125-44989308)
chr8 (166-275)||(44989818-44989927)
[»] chr1 (6 HSPs)
chr1 (191-275)||(21899265-21899349)
chr1 (191-274)||(17663423-17663506)
chr1 (191-274)||(17700473-17700556)
chr1 (225-275)||(22663779-22663829)
chr1 (82-134)||(38227348-38227400)
chr1 (124-162)||(27780888-27780926)
[»] chr4 (4 HSPs)
chr4 (215-273)||(51220144-51220201)
chr4 (170-272)||(51220305-51220410)
chr4 (207-274)||(51219540-51219607)
chr4 (187-273)||(51220940-51221028)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 284
Target Start/End: Complemental strand, 441309 - 441027
Alignment:
Q  2 gagatgaagatatatgaatactgatgatgatgtgattgctgctgaaactttgttgcatatatctcgtggaggttatggcactaaaaggcaaaaactttct 101  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  441309 gagaagaagatatatgaatactgatgacgatgtgattgctgctgaaactttgttgcatatatctcgtggaggttatggcactaaaaggcaaaaactttct 441210  T
Q  102 tgcaatatgatggatgatgatgagaagaagaagaaggaacaaggtgtgttgctaacaagtggtgatattgatgaaacattgaaagataattgccacaatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  441209 tgcaatatgatggatgatgatgagaagaagaagaaggaacaaggtgtgttgctaacaagtggtgatattgatgaaacattgaaagataattgccacaatg 441110  T
Q  202 aaaagaagttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacctcctacctct 284  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  441109 aaaagaagttggcgttgaggttcaaaattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacctcctacctct 441027  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 44989125 - 44989308
Alignment:
Q  83 taaaaggcaaaaactttcttgcaatatgatggatgatgatgagaagaagaagaaggaacaaggtgtgttgctaacaagtg------------gtgatatt 170  Q
    ||||||||||| ||||||||||||||||||||||||| |||   |||||| |||||| ||||||||||||||||||||||            |||||||     
T  44989125 taaaaggcaaacactttcttgcaatatgatggatgataatg---agaagatgaaggagcaaggtgtgttgctaacaagtggtcatgttgtaagtgatata 44989221  T
Q  171 gatgaaacattgaaagataattgccacaatgaaaagaagttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatca 257  Q
    ||| |||  | ||| |||||| ||||||||||||| || |||| ||||||||| |||| ||||||||  ||||||||||||||||||    
T  44989222 gatcaaatgtggaaggataatagccacaatgaaaacaacttggtgttgaggttgaagaatcctaaagacaagatttttcaaacatca 44989308  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 44989927 - 44989818
Alignment:
Q  166 atattgatgaaacattgaaagataattgccacaatgaaaagaagttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattg 265  Q
    ||||||||||||||| |||  ||| | |||| |||||||| |  |||| | ||||| | || | ||||||||  |||||||||| |||||||||||||||    
T  44989927 atattgatgaaacatggaagaatattcgccataatgaaaacatcttggtgctgaggctgaataatcctaaagagaagatttttctaacatcacaagattg 44989828  T
Q  266 caaggaacct 275  Q
    ||||||||||    
T  44989827 caaggaacct 44989818  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 21899349 - 21899265
Alignment:
Q  191 ttgccacaatgaaaagaagttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacct 275  Q
    ||||| ||| |||||||| |||| ||||||||| |||||||||||||  |||||||| |||| ||| ||||||||||||||||||    
T  21899349 ttgccgcaacgaaaagaacttggtgttgaggttgaagattcctaaagacaagattttacaaaaatcgcaagattgcaaggaacct 21899265  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 17663423 - 17663506
Alignment:
Q  191 ttgccacaatgaaaagaagttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacc 274  Q
    ||||||||| |||||||| |||| | ||| ||| | |||||||||||  | ||||||||||||||||||||||| |||||||||    
T  17663423 ttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaacc 17663506  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 17700556 - 17700473
Alignment:
Q  191 ttgccacaatgaaaagaagttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacc 274  Q
    ||||||||| |||||||| |||| | ||| ||| | |||||||||||  | ||||||||||||||||||||||| |||||||||    
T  17700556 ttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaacc 17700473  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 22663829 - 22663779
Alignment:
Q  225 aagattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacct 275  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  22663829 aagattcctaaagacaagatttttcaaacatcacaaaattgcaaggaacct 22663779  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 38227400 - 38227348
Alignment:
Q  82 ctaaaaggcaaaaactttcttgcaatatgatggatgatgatgagaagaagaag 134  Q
    |||||||| |||| || ||||||||||||||||||||| ||||||||||||||    
T  38227400 ctaaaaggaaaaatctctcttgcaatatgatggatgataatgagaagaagaag 38227348  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 27780888 - 27780926
Alignment:
Q  124 agaagaagaagaaggaacaaggtgtgttgctaacaagtg 162  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  27780888 agaagaagaagaaggaacaagatgtgttgctaacaagtg 27780926  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 51220201 - 51220144
Alignment:
Q  215 gttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattgcaaggaac 273  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  51220201 gttgaggttcaagattcctaaagaca-gatttttcaaacatcacaagattgcaaggaac 51220144  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 51220305 - 51220410
Alignment:
Q  170 tgatgaaacattgaaagataattgccacaatgaaaagaag---ttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattgc 266  Q
    ||||||| ||| ||| ||| || ||||||||||||||||    | ||||||||| ||||| ||| |||||| ||||||||||| |||||| |||||||||    
T  51220305 tgatgaatcatagaaggatgatagccacaatgaaaagaacaattcggcgttgagtttcaaaatttctaaagataagatttttcgaacatctcaagattgc 51220404  T
Q  267 aaggaa 272  Q
    ||||||    
T  51220405 aaggaa 51220410  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 51219540 - 51219607
Alignment:
Q  207 aagttggcgttgaggttcaagattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacc 274  Q
    |||| ||||||||| ||||||| | ||||||  |||||||| |||||||| |||||||||||||||||    
T  51219540 aagtcggcgttgagtttcaagagttctaaagacaagattttgcaaacatctcaagattgcaaggaacc 51219607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 51221028 - 51220940
Alignment:
Q  187 ataattgccacaatgaaa---agaagttggcgttgaggttcaagattcctaaaggtaaga-tttttcaaacatcacaagattgcaaggaac 273  Q
    ||||| ||||||||||||   |||||| || ||| ||||| |||||||||||||  |||| |||||||||||||||  |||||||||||||    
T  51221028 ataatagccacaatgaaatgaagaagtgggtgttaaggtttaagattcctaaagacaagattttttcaaacatcac--gattgcaaggaac 51220940  T

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