View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16829_low_13 (Length: 279)
Name: NF16829_low_13
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16829_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 27736162 - 27735911
Alignment:
| Q |
20 |
gcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27736162 |
gcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatca |
27736063 |
T |
|
| Q |
120 |
tttgtcatcaataaattggaagtttctgaagttaattggaatgctcttgatgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagag |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27736062 |
tttgtcatcaataaattggaggtttctgaagttaattggaatgctcttgatgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagag |
27735963 |
T |
|
| Q |
220 |
atgatggatacagtatggcacaatgcattagggctgtggctgaacctttgct |
271 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27735962 |
atgatggatacaatatggcacaatgcattagggctgtggctgaacctttgct |
27735911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 32627131 - 32626979
Alignment:
| Q |
22 |
agggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatt |
121 |
Q |
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|||||||||| || ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| | | |||||||||||| |
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| T |
32627131 |
agggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatt |
32627032 |
T |
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| Q |
122 |
tgtcatcaataaattggaagtttctgaagttaattggaatgctcttgatgatt |
174 |
Q |
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|||||| ||| || | || | |||||||| ||||||||||||| |||||||| |
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| T |
32627031 |
tgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtgatgatt |
32626979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 32708783 - 32708662
Alignment:
| Q |
49 |
atactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaagtttctga |
148 |
Q |
| |
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||||||||||||||||| | || |||||||||||| |||||||| |||||||||||||| |||||||||||| |||| || ||||| ||||||||| |
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| T |
32708783 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctga |
32708684 |
T |
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| Q |
149 |
agttaattggaatgctcttgat |
170 |
Q |
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||| |||||||||||||||||| |
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| T |
32708683 |
agtgaattggaatgctcttgat |
32708662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 7297233 - 7297150
Alignment:
| Q |
48 |
aatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaat |
131 |
Q |
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|||||||| || ||||| | ||||||||||| |||| |||||| |||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
7297233 |
aatacttttaatgtccctcaatattatccatcaccatatgaagttgagttagaagttctcaatgaaggatcatttgccatcaat |
7297150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 7292342 - 7292259
Alignment:
| Q |
48 |
aatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaat |
131 |
Q |
| |
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|||||||| |||||||| | |||||||| ||||| ||||||| | ||||||||| ||||||||||||| |||||||||||| |
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|
| T |
7292342 |
aatacttttaacatcccgcactattatccgtctccgaatgaagtggaattggaagttgtcaatgaaggatcgtttgtcatcaat |
7292259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 32626960 - 32626906
Alignment:
| Q |
217 |
gagatgatggatacagtatggcacaatgcattagggctgtggctgaacctttgct |
271 |
Q |
| |
|
||||||||||||||| | ||||||||||||| || ||| |||||||||||||||| |
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|
| T |
32626960 |
gagatgatggatacaatgtggcacaatgcatgagagctttggctgaacctttgct |
32626906 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 32702725 - 32702691
Alignment:
| Q |
235 |
tggcacaatgcattagggctgtggctgaacctttg |
269 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
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| T |
32702725 |
tggcacaatgcataagggctgtggctgaacctttg |
32702691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 5810829 - 5810680
Alignment:
| Q |
20 |
gcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatca |
119 |
Q |
| |
|
||||||||||||| || |||||||| |||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
5810829 |
gcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatca |
5810730 |
T |
|
| Q |
120 |
tttgtcatcaataaattggaagtttctgaagttaattggaatgctcttga |
169 |
Q |
| |
|
|| ||||| | ||| || ||||||||||| ||||||||||||||||| |
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| T |
5810729 |
ttctccatcagtcgattagaggtttctgaagtaaattggaatgctcttga |
5810680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 5810662 - 5810611
Alignment:
| Q |
220 |
atgatggatacagtatggcacaatgcattagggctgtggctgaacctttgct |
271 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||||||||||||||||||||| |
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| T |
5810662 |
atgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgct |
5810611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 20117882 - 20118001
Alignment:
| Q |
20 |
gcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatca |
119 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||| | |||||| ||| |
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| T |
20117882 |
gcagggaatcatagaagaagagaccctcaatactttcaatctccctaactattatccatctccaactgaagtgaaattggaagttctaactgaagggtca |
20117981 |
T |
|
| Q |
120 |
tttgtcatcaataaattgga |
139 |
Q |
| |
|
||||||||| || ||||||| |
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|
| T |
20117982 |
tttgtcatcgatcaattgga |
20118001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 21941968 - 21941798
Alignment:
| Q |
20 |
gcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatca |
119 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||| |||| |||| |||||||||||||||| | || |||||||||| | ||||| |||| |
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| T |
21941968 |
gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatca |
21941869 |
T |
|
| Q |
120 |
tttgtcatcaataaattggaagtttctgaagttaattggaatgctcttgatgattgtaatgcctttgactt |
190 |
Q |
| |
|
|||| ||| ||| ||| ||||||| |||| ||| |||||| ||||||| |||| ||||| ||||||| |
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|
| T |
21941868 |
tttgacattaatggatttcaagtttcgcaagtaaataggaatgatcttgataattgcaatgcagttgactt |
21941798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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