View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16829_low_17 (Length: 241)
Name: NF16829_low_17
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16829_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 19276707 - 19276937
Alignment:
| Q |
12 |
atgaaaataaggtttt-tctttggtgtattttcaatttcaaacatagggaggttcaaaatcaggaggagaaagtactgattcaggatcaacagagctaca |
110 |
Q |
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| T |
19276707 |
atgaaaataaggttttgtttttggtgtattttcaatttcaaacatagggaggttcaaaatcaggaggagaaagtactgattcaggatcaacagagctaca |
19276806 |
T |
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| Q |
111 |
atttgaaacagattctccaataagtgtaaaagcatcttcttcagatcatcataatcatgcttttcaacaggagacagcaactgatgatggattaagaaca |
210 |
Q |
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| T |
19276807 |
atttgaaacaaattctccaataagtgtaaaagcatcttcttcagatcatcataatcatgcttttcaacaggagacagcaactgatgatggattaagaaca |
19276906 |
T |
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| Q |
211 |
ggcacatcaacacagaatcaatcaaaagcca |
241 |
Q |
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| T |
19276907 |
ggcacatcaacacagaatcaatcaaaagcca |
19276937 |
T |
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