View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16829_low_2 (Length: 527)

Name: NF16829_low_2
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16829_low_2
NF16829_low_2
[»] chr1 (5 HSPs)
chr1 (99-192)||(28667167-28667260)
chr1 (269-330)||(28666286-28666347)
chr1 (484-521)||(9023670-9023707)
chr1 (484-521)||(42055639-42055676)
chr1 (484-521)||(44310889-44310926)
[»] chr6 (3 HSPs)
chr6 (440-520)||(13758365-13758445)
chr6 (484-520)||(1213236-1213272)
chr6 (484-521)||(15060384-15060421)
[»] scaffold0229 (1 HSPs)
scaffold0229 (484-520)||(14399-14435)
[»] chr7 (2 HSPs)
chr7 (410-521)||(9420922-9421033)
chr7 (484-520)||(5771279-5771315)
[»] chr4 (1 HSPs)
chr4 (484-521)||(24610908-24610945)
[»] chr3 (1 HSPs)
chr3 (484-520)||(29714205-29714241)


Alignment Details
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 28667260 - 28667167
Alignment:
Q  99 catggtcgtagactaaatatat-cacctctcatagctaagatcgaacatttgtttgtcatttatgctagcatctgtaaaattgaatcatagaatt 192  Q
    |||||||||| |||||||  || ||||||||||||||||||||||||||||||||||| |||| |||||||||  ||||||| ||||||||||||    
T  28667260 catggtcgtacactaaatgcatacacctctcatagctaagatcgaacatttgtttgtctttta-gctagcatccttaaaattaaatcatagaatt 28667167  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 28666347 - 28666286
Alignment:
Q  269 actactaggtgcttttacaaagaaataattcctttggagagatagtataatgaatagagagt 330  Q
    |||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28666347 actacttggtgctcttacaaagatataattcctttggagagatagtataatgaatagagagt 28666286  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 9023707 - 9023670
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcatttc 521  Q
    |||||||||||||| |||||||||||||||||||||||    
T  9023707 tttagctcattgttgtgtttttattagctcttcatttc 9023670  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Original strand, 42055639 - 42055676
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcatttc 521  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  42055639 tttagttcattgttgtgtttttattagctcttcatttc 42055676  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 44310926 - 44310889
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcatttc 521  Q
    |||||||||||||| || ||||||||||||||||||||    
T  44310926 tttagctcattgttgtgcttttattagctcttcatttc 44310889  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 13758365 - 13758445
Alignment:
Q  440 ataatatgagaaaaatgatctttatataatacatcatnnnnnnntttagctcattgttttgtttttattagctcttcattt 520  Q
    |||||||||||||||||  | ||| ||||||||||||       |||||||||||||| ||||||||||| ||||||||||    
T  13758365 ataatatgagaaaaatgccccttacataatacatcataattttttttagctcattgttgtgtttttattaactcttcattt 13758445  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 1213272 - 1213236
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcattt 520  Q
    |||||||||||||| ||||||||||||||||||||||    
T  1213272 tttagctcattgttgtgtttttattagctcttcattt 1213236  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 15060421 - 15060384
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcatttc 521  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  15060421 tttagctcattgttgtgtttttattagctctttatttc 15060384  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 14435 - 14399
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcattt 520  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14435 tttagctcattgttgtgtttttattagctcttcattt 14399  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 521
Target Start/End: Complemental strand, 9421033 - 9420922
Alignment:
Q  410 gaccgttcctagagtttcatggacttagatataatatgagaaaaatgatct-ttatataatacatcatnnnnnnntttagctcattgttttgtttttatt 508  Q
    |||||||||||||||||  ||| ||||| |||||||| || |||||| ||| |||||||||| |||||       ||||| | |||||| ||||||||||    
T  9421033 gaccgttcctagagtttactggccttaggtataatattag-aaaatggtctcttatataatagatcataattttttttagtttattgttgtgtttttatt 9420935  T
Q  509 agctcttcatttc 521  Q
    || ||||||||||    
T  9420934 agatcttcatttc 9420922  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 5771315 - 5771279
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcattt 520  Q
    |||||||||||||| || |||||||||||||||||||    
T  5771315 tttagctcattgttgtgattttattagctcttcattt 5771279  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Original strand, 24610908 - 24610945
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcatttc 521  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  24610908 tttagctcattgttgtgtttttattagttcttcatttc 24610945  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 29714241 - 29714205
Alignment:
Q  484 tttagctcattgttttgtttttattagctcttcattt 520  Q
    |||||||||||||| || |||||||||||||||||||    
T  29714241 tttagctcattgttgtgattttattagctcttcattt 29714205  T

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