View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16829_low_3 (Length: 472)

Name: NF16829_low_3
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16829_low_3
NF16829_low_3
[»] chr8 (2 HSPs)
chr8 (5-269)||(23572966-23573229)
chr8 (393-453)||(23572910-23572970)
[»] chr3 (3 HSPs)
chr3 (306-420)||(28868428-28868542)
chr3 (215-288)||(28868187-28868259)
chr3 (6-59)||(3064181-3064234)
[»] chr6 (2 HSPs)
chr6 (91-176)||(310379-310464)
chr6 (8-59)||(34374239-34374290)
[»] chr1 (3 HSPs)
chr1 (6-60)||(10927746-10927800)
chr1 (6-59)||(31915123-31915176)
chr1 (6-59)||(40805444-40805497)
[»] scaffold0024 (1 HSPs)
scaffold0024 (6-59)||(144354-144407)
[»] chr4 (1 HSPs)
chr4 (6-59)||(10494509-10494562)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 269
Target Start/End: Complemental strand, 23573229 - 23572966
Alignment:
Q  5 ttcccattgaaaaaatgtggtagcatgccggatactttctagatccatcattttacccaaagtaagaccatgtaatagcatgctttcaaaagaaatatta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23573229 ttcccattgaaaaaatgtggtagcatgccggatactttctagatccatcattttacccaaagtaagaccatgtaatagcatgcttccaaaagaaatatta 23573130  T
Q  105 acattctcctcatggaataaatgatttatggaatatggtgttggaattagcatagacgctagcattgtttggtcataatcatttctctcacataagtttc 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23573129 acattctcctcatggaataaatgatttatggaatatggtgtttgaattagcatagacgctagcattgtttggtcataatcatttctctcacataagtttc 23573030  T
Q  205 tgaaaacattatcattgtcaattttcatccactttctgttaccaaataaatattatgtctccaag 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  23573029 tgaaaacattatcattgtcaattttcatccactttctgttaccaaat-aatattatgtttccaag 23572966  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 23572970 - 23572910
Alignment:
Q  393 ccaagttttatagtatcaatagaatgtccttctgctgcaacaattgttccatccgttgaag 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23572970 ccaagttttatagtatcaatagaatgtccttctgctgcaacaattgttccatccggtgaag 23572910  T

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Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 306 - 420
Target Start/End: Original strand, 28868428 - 28868542
Alignment:
Q  306 ttcttttgagaacattctcttgcagctatacaacttaacacaccctcttcctgagcaccattcaaatcaaatgaacggatgacagcaccaagttttatag 405  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||   |    
T  28868428 ttcttatgagaacattctcttgcagctatacaacttaacacaccctcttcctgagcatcattcaaatcaaatgaacggatgacagcaccaagtcttgatg 28868527  T
Q  406 tatcaatagaatgtc 420  Q
    |||||||||||||||    
T  28868528 tatcaatagaatgtc 28868542  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 28868187 - 28868259
Alignment:
Q  215 atcattgtcaattttcatccactttctgttaccaaataaatattatgtctccaagaccataagtgagataatca 288  Q
    |||||||||||| ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  28868187 atcattgtcaatcttcatccgctttctgttaccaaataa-tactatgtctccaagaccataagtgagataatca 28868259  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 3064181 - 3064234
Alignment:
Q  6 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 59  Q
    |||||||||| | |||| ||||||| ||  ||||||||||||||||||||||||    
T  3064181 tcccattgaacatatgtagtagcataccaaatactttctagatccatcatttta 3064234  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 310464 - 310379
Alignment:
Q  91 caaaagaaatattaacattctcctcatggaataaatgatttatggaatatggtgttggaattagcatagacgctagcattgtttgg 176  Q
    ||||||| |||| ||||| ||||||||||||| || |||||||||||||||||   ||||||||| ||||||||||||||| ||||    
T  310464 caaaagacatatgaacatcctcctcatggaatgaacgatttatggaatatggttgcggaattagcgtagacgctagcattgcttgg 310379  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 34374239 - 34374290
Alignment:
Q  8 ccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 59  Q
    ||||||| ||||||| ||||||||| |||||| || ||||||||||||||||    
T  34374239 ccattgagaaaatgtagtagcatgctggatacattatagatccatcatttta 34374290  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 10927800 - 10927746
Alignment:
Q  6 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcattttac 60  Q
    |||||||||| |||||| ||| ||||||| |||||||||||||||  ||||||||    
T  10927800 tcccattgaagaaatgtagtaacatgccgaatactttctagatcctccattttac 10927746  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 31915176 - 31915123
Alignment:
Q  6 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 59  Q
    |||||||||| |||||  ||||||||| | ||| ||||||||||||||||||||    
T  31915176 tcccattgaagaaatgcagtagcatgctgaatattttctagatccatcatttta 31915123  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 40805497 - 40805444
Alignment:
Q  6 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 59  Q
    |||||||||| |||||| ||||||||| | |||| ||||| |||||||||||||    
T  40805497 tcccattgaagaaatgtagtagcatgctgaatacattctaaatccatcatttta 40805444  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 144354 - 144407
Alignment:
Q  6 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 59  Q
    |||||||||| |||||| ||||||||||| ||||  |||| |||||||||||||    
T  144354 tcccattgaagaaatgtagtagcatgccgaatacgctctaaatccatcatttta 144407  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 10494562 - 10494509
Alignment:
Q  6 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 59  Q
    |||||||||| |||||| | ||||||| |  |||||||||||||||||||||||    
T  10494562 tcccattgaagaaatgtagaagcatgctgagtactttctagatccatcatttta 10494509  T

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