View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16829_low_4 (Length: 451)

Name: NF16829_low_4
Description: NF16829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16829_low_4
NF16829_low_4
[»] scaffold0095 (1 HSPs)
scaffold0095 (43-305)||(27217-27486)
[»] chr8 (3 HSPs)
chr8 (43-305)||(39403259-39403528)
chr8 (402-439)||(38362413-38362450)
chr8 (407-435)||(4622931-4622959)
[»] chr5 (4 HSPs)
chr5 (402-435)||(27020257-27020290)
chr5 (402-435)||(37270238-37270271)
chr5 (403-435)||(9591605-9591637)
chr5 (403-435)||(42612432-42612464)
[»] chr4 (6 HSPs)
chr4 (402-435)||(4652785-4652818)
chr4 (403-435)||(41041641-41041673)
chr4 (396-435)||(23419505-23419544)
chr4 (403-441)||(16664482-16664520)
chr4 (403-435)||(13534762-13534794)
chr4 (403-435)||(20354273-20354305)
[»] chr3 (3 HSPs)
chr3 (403-435)||(30043672-30043704)
chr3 (401-435)||(37220287-37220321)
chr3 (407-435)||(40905999-40906027)
[»] chr1 (3 HSPs)
chr1 (405-435)||(7152718-7152748)
chr1 (403-435)||(21096641-21096673)
chr1 (403-435)||(44512569-44512601)
[»] chr7 (5 HSPs)
chr7 (402-435)||(725673-725706)
chr7 (402-435)||(44459443-44459476)
chr7 (403-435)||(5374623-5374655)
chr7 (403-435)||(9663738-9663770)
chr7 (403-435)||(33246788-33246820)
[»] chr6 (3 HSPs)
chr6 (403-435)||(11837827-11837859)
chr6 (403-435)||(14103784-14103816)
chr6 (403-435)||(23580078-23580110)
[»] chr2 (4 HSPs)
chr2 (403-435)||(3907086-3907118)
chr2 (403-435)||(14006231-14006263)
chr2 (405-441)||(28391977-28392013)
chr2 (403-435)||(37726099-37726131)


Alignment Details
Target: scaffold0095 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 43 - 305
Target Start/End: Original strand, 27217 - 27486
Alignment:
Q  43 caacaaccttagagttttcgtggaaattgaggttttgattattctatgatattttgtttgaaaattagttggtgagtggaaatgaaaatagtgagtactt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  27217 caacaaccttagagttttcgtggaaattgaggttttgattattctattatgttttgtttgaaaattagttagtgagtggaaatgaaaagagtgagtactt 27316  T
Q  143 acggtgaagtttcgtttgcagtcatggaatgaaaaataaaaatggttttaattttctaattttgtttcttaaattggggtctttgtcttgtggagaagaa 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27317 acggtgaagtttcgtttgcagccatggaatgaaaaataaaaatggttttaattttctaattttgtttcttaaattggggtctttgtcttgtggagaagaa 27416  T
Q  243 gaatgagtaaggtttcaag-------tttgaatgagcaacttgagttgaatcttctttggcctttgaatt 305  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  27417 gaatgagtaaggtttcaagtttcaactttgaatgagcaacttgagttgaatcttctttggcctttgaatt 27486  T

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Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 43 - 305
Target Start/End: Original strand, 39403259 - 39403528
Alignment:
Q  43 caacaaccttagagttttcgtggaaattgaggttttgattattctatgatattttgtttgaaaattagttggtgagtggaaatgaaaatagtgagtactt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  39403259 caacaaccttagagttttcgtggaaattgaggttttgattattctattatgttttgtttgaaaattagttagtgagtggaaatgaaaagagtgagtactt 39403358  T
Q  143 acggtgaagtttcgtttgcagtcatggaatgaaaaataaaaatggttttaattttctaattttgtttcttaaattggggtctttgtcttgtggagaagaa 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39403359 acggtgaagtttcgtttgcagccatggaatgaaaaataaaaatggttttaattttctaattttgtttcttaaattggggtctttgtcttgtggagaagaa 39403458  T
Q  243 gaatgagtaaggtttcaag-------tttgaatgagcaacttgagttgaatcttctttggcctttgaatt 305  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  39403459 gaatgagtaaggtttcaagtttcaactttgaatgagcaacttgagttgaatcttctttggcctttgaatt 39403528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 38362413 - 38362450
Alignment:
Q  402 aggtgaggcctacattaccctctcttgtttagagaata 439  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  38362413 aggtgaggtctagattaccctctcttgtttagagaata 38362450  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Complemental strand, 4622959 - 4622931
Alignment:
Q  407 aggcctacattaccctctcttgtttagag 435  Q
    |||||||||||||||||||||||||||||    
T  4622959 aggcctacattaccctctcttgtttagag 4622931  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 27020290 - 27020257
Alignment:
Q  402 aggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||||||||||||||||||||||||||    
T  27020290 aggtgaggcctacattaccctctcttgtttagag 27020257  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 37270238 - 37270271
Alignment:
Q  402 aggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  37270238 aggtgaggcctacgttaccctctcttgtttagag 37270271  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 9591605 - 9591637
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||| |||||||||||||||||||||||||    
T  9591605 ggtgaggtctacattaccctctcttgtttagag 9591637  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 42612464 - 42612432
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  42612464 ggtgaggcctacgttaccctctcttgtttagag 42612432  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 4652785 - 4652818
Alignment:
Q  402 aggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||||||||||||||||||||||||||    
T  4652785 aggtgaggcctacattaccctctcttgtttagag 4652818  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 41041673 - 41041641
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||||||||||||||||||||||||    
T  41041673 ggtgaggcctacattaccctctcttgtttagag 41041641  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 435
Target Start/End: Complemental strand, 23419544 - 23419505
Alignment:
Q  396 aatttcaggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  23419544 aattttaggtgaggcctacgttaccctctcttgtttagag 23419505  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 441
Target Start/End: Original strand, 16664482 - 16664520
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagagaataat 441  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  16664482 ggtgaggcctacgttaccctctcttgtttagaggataat 16664520  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 13534794 - 13534762
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||| |||||||||||||||||||||    
T  13534794 ggtgaggcctatattaccctctcttgtttagag 13534762  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 20354305 - 20354273
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  20354305 ggtgaggcctacgttaccctctcttgtttagag 20354273  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 30043704 - 30043672
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||||||||||||||||||||||||    
T  30043704 ggtgaggcctacattaccctctcttgtttagag 30043672  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 435
Target Start/End: Complemental strand, 37220321 - 37220287
Alignment:
Q  401 caggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||||| ||||||||||||||||||||    
T  37220321 caggtgaggcctacgttaccctctcttgtttagag 37220287  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 40905999 - 40906027
Alignment:
Q  407 aggcctacattaccctctcttgtttagag 435  Q
    |||||||||||||||||||||||||||||    
T  40905999 aggcctacattaccctctcttgtttagag 40906027  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Original strand, 7152718 - 7152748
Alignment:
Q  405 tgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||||||||||||||||||||||    
T  7152718 tgaggcctacattaccctctcttgtttagag 7152748  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 21096641 - 21096673
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  21096641 ggtgaggcctacgttaccctctcttgtttagag 21096673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 44512601 - 44512569
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||||||||| |||||||||||||||    
T  44512601 ggtgaggcctacattactctctcttgtttagag 44512569  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 725706 - 725673
Alignment:
Q  402 aggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  725706 aggtgaggcctacgttaccctctcttgtttagag 725673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 44459476 - 44459443
Alignment:
Q  402 aggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  44459476 aggtgaggcctacgttaccctctcttgtttagag 44459443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 5374655 - 5374623
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  5374655 ggtgaggcctacgttaccctctcttgtttagag 5374623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 9663770 - 9663738
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||| |||||||||||||||||||||    
T  9663770 ggtgaggcctatattaccctctcttgtttagag 9663738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 33246820 - 33246788
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||| ||||||||||||||||||||||||    
T  33246820 ggtgaggcttacattaccctctcttgtttagag 33246788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 11837859 - 11837827
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  11837859 ggtgaggcctacgttaccctctcttgtttagag 11837827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 14103784 - 14103816
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  14103784 ggtgaggcctacgttaccctctcttgtttagag 14103816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 23580078 - 23580110
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  23580078 ggtgaggcctaccttaccctctcttgtttagag 23580110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 3907118 - 3907086
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    ||||||||||||||||| |||||||||||||||    
T  3907118 ggtgaggcctacattacactctcttgtttagag 3907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 14006263 - 14006231
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||||||||||||||||||| ||||    
T  14006263 ggtgaggcctacattaccctctcttgttaagag 14006231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 28392013 - 28391977
Alignment:
Q  405 tgaggcctacattaccctctcttgtttagagaataat 441  Q
    |||||||||| |||||||||||||||||||| |||||    
T  28392013 tgaggcctacgttaccctctcttgtttagaggataat 28391977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 37726131 - 37726099
Alignment:
Q  403 ggtgaggcctacattaccctctcttgtttagag 435  Q
    |||||||||||| ||||||||||||||||||||    
T  37726131 ggtgaggcctacgttaccctctcttgtttagag 37726099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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