View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1682_high_3 (Length: 411)
Name: NF1682_high_3
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1682_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 25 - 396
Target Start/End: Complemental strand, 8440722 - 8440352
Alignment:
| Q |
25 |
ggatctataacccataaatcaacaagagatccgcctctcccactacagaaatgccaatggcgatggagatttgtcaaatgggg-agaagaataatgaaag |
123 |
Q |
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| T |
8440722 |
ggatctagaacccataaatcaacaagagatccgcctctcccactacataattgccaatggcgatggagatttgtcaaatgggggagaagaataatgaaag |
8440623 |
T |
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| Q |
124 |
atgaaggaaaggagaagtggtcaaattgaatttcagttatgtacgtgcatatggaaggctacggagaaatgggaagtgcgacgattagaatgttaaaaat |
223 |
Q |
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| T |
8440622 |
atgaaggaaaggagaagtggtcaaattgagtttcagttatgtacgtacagatggaaggctacggagaaatgggaagtgcgacg-ttagaatgttaaaaat |
8440524 |
T |
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| Q |
224 |
tgatacatgttatatgtgttaaaaacttcaacggagattgatcaagggtcatcattggacacaatttaaggccaaattcgcaagccactttttacaaatt |
323 |
Q |
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| T |
8440523 |
tgatatatgttatatgtgttaaaaacttcaacggagattgatcaagggtcatcattggacacaatttaaggccaaattcgcaagccactttttacaaatt |
8440424 |
T |
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| Q |
324 |
tgagannnnnnnnnnnataagcttgagataaatttatgaaactgctttgttgatcggcttgcaaaaatatatt |
396 |
Q |
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| T |
8440423 |
tgaga-ttttttttttataagcttgagataaatttatgaaactgctttgttgatcggcttgcaaaaatatatt |
8440352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 8442622 - 8442431
Alignment:
| Q |
25 |
ggatctataacccataaatcaacaagagatccgcctctcccactacagaaatgccaatggcgatggagatttgtcaaatggggagaagaataatgaaaga |
124 |
Q |
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| T |
8442622 |
ggatctagaacccataaatcaacaagagatccgcctctcccactacagaaatgtcaatggtgatggagatttgtcaaacggggagaagaataatgaaaga |
8442523 |
T |
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| Q |
125 |
tgaaggaaaggagaagtggtcaaattgaatttcagttatgtacgtgcatatggaaggctacggagaaatgggaagtgcgacgattagaatgt |
216 |
Q |
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| T |
8442522 |
tgaaggaaaggagaagtggtcaaatcgagtttcagttatgtatgtacatatggaaggctatggagaaatgggaagtgcgacggttaaaatgt |
8442431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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