View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1682_low_1 (Length: 598)

Name: NF1682_low_1
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1682_low_1
NF1682_low_1
[»] chr2 (11 HSPs)
chr2 (103-546)||(8277183-8277641)
chr2 (363-546)||(11573807-11573997)
chr2 (367-546)||(31133288-31133467)
chr2 (407-538)||(20927513-20927644)
chr2 (401-538)||(35000438-35000575)
chr2 (405-525)||(22787796-22787916)
chr2 (407-515)||(9829375-9829483)
chr2 (292-355)||(8273259-8273322)
chr2 (310-355)||(22727694-22727739)
chr2 (308-350)||(22787991-22788033)
chr2 (298-355)||(11712978-11713035)
[»] chr6 (12 HSPs)
chr6 (292-546)||(31522345-31522599)
chr6 (365-546)||(32275543-32275724)
chr6 (407-522)||(13543678-13543792)
chr6 (293-355)||(32274199-32274261)
chr6 (294-355)||(32275772-32275833)
chr6 (295-355)||(25400850-25400910)
chr6 (435-546)||(4321530-4321633)
chr6 (292-355)||(14153368-14153431)
chr6 (306-359)||(4319112-4319165)
chr6 (292-355)||(35060896-35060959)
chr6 (306-351)||(7203956-7204001)
chr6 (295-323)||(17436053-17436081)
[»] chr4 (26 HSPs)
chr4 (365-546)||(23283337-23283518)
chr4 (365-546)||(36499082-36499263)
chr4 (365-534)||(55523901-55524070)
chr4 (389-546)||(24972590-24972746)
chr4 (365-546)||(45246753-45246934)
chr4 (365-514)||(12586361-12586510)
chr4 (407-535)||(22182152-22182280)
chr4 (407-546)||(33990762-33990901)
chr4 (407-546)||(50008797-50008936)
chr4 (407-515)||(43210023-43210129)
chr4 (407-515)||(1938580-1938688)
chr4 (407-515)||(41418911-41419019)
chr4 (407-506)||(156886-156985)
chr4 (407-546)||(50336192-50336331)
chr4 (292-356)||(34235704-34235768)
chr4 (292-355)||(51719775-51719838)
chr4 (294-351)||(54208196-54208253)
chr4 (292-355)||(33164506-33164569)
chr4 (292-355)||(36501866-36501929)
chr4 (407-515)||(12656515-12656630)
chr4 (306-355)||(24974147-24974196)
chr4 (420-515)||(6599373-6599469)
chr4 (295-355)||(45246982-45247042)
chr4 (292-355)||(36172179-36172242)
chr4 (395-433)||(29348901-29348938)
chr4 (295-355)||(23283231-23283291)
[»] chr5 (18 HSPs)
chr5 (295-546)||(763105-763355)
chr5 (365-536)||(30491525-30491697)
chr5 (390-546)||(34017399-34017555)
chr5 (389-544)||(38739536-38739690)
chr5 (346-546)||(5504874-5505068)
chr5 (366-502)||(33143948-33144085)
chr5 (407-515)||(20887698-20887806)
chr5 (407-546)||(32910585-32910724)
chr5 (448-538)||(15235047-15235137)
chr5 (406-492)||(16109318-16109403)
chr5 (305-355)||(28677913-28677963)
chr5 (407-515)||(29195858-29195966)
chr5 (295-355)||(34017620-34017680)
chr5 (296-359)||(34016020-34016083)
chr5 (294-355)||(6706036-6706097)
chr5 (407-485)||(8736470-8736550)
chr5 (296-341)||(17636362-17636407)
chr5 (307-355)||(5506692-5506740)
[»] chr3 (22 HSPs)
chr3 (365-546)||(7666689-7666870)
chr3 (365-546)||(35995262-35995443)
chr3 (363-546)||(35063090-35063272)
chr3 (373-546)||(19866917-19867090)
chr3 (389-546)||(34086559-34086718)
chr3 (426-546)||(39649705-39649825)
chr3 (407-515)||(14443751-14443859)
chr3 (407-515)||(54335654-54335762)
chr3 (407-546)||(30933795-30933934)
chr3 (407-515)||(11916930-11917038)
chr3 (407-546)||(20518049-20518188)
chr3 (407-514)||(30528497-30528604)
chr3 (407-546)||(53767224-53767363)
chr3 (292-359)||(15040695-15040762)
chr3 (292-351)||(4969889-4969948)
chr3 (292-355)||(6162683-6162746)
chr3 (292-355)||(53814562-53814625)
chr3 (292-351)||(30533234-30533293)
chr3 (310-342)||(2652950-2652982)
chr3 (292-328)||(13843621-13843657)
chr3 (295-355)||(35062984-35063044)
chr3 (298-326)||(35106011-35106039)
[»] scaffold1063 (1 HSPs)
scaffold1063 (366-546)||(1601-1782)
[»] chr1 (19 HSPs)
chr1 (365-546)||(33402866-33403047)
chr1 (365-546)||(35577246-35577426)
chr1 (365-546)||(48025714-48025894)
chr1 (389-546)||(25817598-25817755)
chr1 (406-546)||(3368236-3368376)
chr1 (407-515)||(16315158-16315266)
chr1 (407-515)||(12063560-12063668)
chr1 (407-546)||(23941635-23941774)
chr1 (292-355)||(28475983-28476046)
chr1 (407-511)||(30704342-30704446)
chr1 (292-355)||(28446531-28446594)
chr1 (294-355)||(45688324-45688385)
chr1 (471-514)||(18426397-18426440)
chr1 (292-359)||(28474806-28474873)
chr1 (292-355)||(33617658-33617721)
chr1 (305-355)||(35563532-35563582)
chr1 (295-325)||(49033761-49033791)
chr1 (305-359)||(50065505-50065559)
chr1 (295-323)||(28442939-28442967)
[»] scaffold0037 (1 HSPs)
scaffold0037 (365-546)||(38109-38289)
[»] chr8 (15 HSPs)
chr8 (365-546)||(34276368-34276548)
chr8 (407-515)||(14189780-14189890)
chr8 (407-515)||(24626064-24626172)
chr8 (365-442)||(33228293-33228370)
chr8 (406-546)||(2807157-2807296)
chr8 (436-538)||(32075054-32075156)
chr8 (292-355)||(5967238-5967301)
chr8 (455-538)||(20532099-20532182)
chr8 (407-522)||(13868202-13868319)
chr8 (295-359)||(31762258-31762322)
chr8 (407-454)||(20534374-20534421)
chr8 (292-355)||(33220788-33220851)
chr8 (296-355)||(34279562-34279621)
chr8 (292-351)||(37687317-37687376)
chr8 (407-478)||(41601120-41601191)
[»] chr7 (16 HSPs)
chr7 (386-546)||(2369658-2369818)
chr7 (375-546)||(4452382-4452553)
chr7 (375-485)||(4452765-4452873)
chr7 (407-546)||(44222009-44222148)
chr7 (407-546)||(23941343-23941482)
chr7 (407-515)||(4278602-4278711)
chr7 (365-446)||(10526856-10526937)
chr7 (407-546)||(11356339-11356478)
chr7 (407-477)||(13070509-13070579)
chr7 (292-355)||(5173-5236)
chr7 (457-515)||(12868664-12868722)
chr7 (407-514)||(31730907-31731015)
chr7 (294-355)||(38386190-38386251)
chr7 (474-538)||(23562298-23562362)
chr7 (294-323)||(5060864-5060893)
chr7 (296-356)||(20379668-20379728)
[»] scaffold0599 (1 HSPs)
scaffold0599 (407-515)||(8681-8789)
[»] scaffold1050 (1 HSPs)
scaffold1050 (407-509)||(2061-2163)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 103 - 546
Target Start/End: Complemental strand, 8277641 - 8277183
Alignment:
Q  103 taatggatgatcggatcgaatcgaagtgaaattggggtttgtgtgagagtttataaagaattgaaattagggtttgtttgggtttgggctgtgtgattga 202  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8277641 taatggatgatcggatcgaatcgaagtgaaattgaggtttgtgtgagagtttataaagaattgaaattagggtttgtttgggtttgggttgtgtgattga 8277542  T
Q  203 gtttaacacggaacgtctacttatactttctgtttaagacttcttagtatcgcttcgtcaccaagtaagctatgataagaattctgcaaacccaaatggt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  8277541 gtttaacacggaacgtctacttatactttctgtttaagacttcttcgtatcgcttcgtcaccaagtaagctacgagaagaattctgcacacccaaatggt 8277442  T
Q  303 tccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaa-------catg--cact------aatcattatttttgttcaaaatcctgtag 387  Q
    |||||||||||||||||||||||| |||||| ||| |||| |||||||       ||||   |||      || || ||||||||||||||| || ||||    
T  8277441 tccgctcattcccaaagtaaatgaccgaaatgcccttacgcaagttaatgtagcgcatgttaacttgcgtcaagcactatttttgttcaaaacccagtag 8277342  T
Q  388 gcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||||||||    
T  8277341 gcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaaatgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgt 8277242  T
Q  488 taggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
     |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8277241 caggaaacaagtttctacgctcatcaagtatcaaagaacaggtaatgtatcgtcaaaac 8277183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 363 - 546
Target Start/End: Original strand, 11573807 - 11573997
Alignment:
Q  363 attatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtga-------aattttgggc 455  Q
    |||||||| |||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||       |||||||||     
T  11573807 attattttcgttcaaaacccagcagacaaccacaaagctccattttttctttccctccacctccaaaaaccccaaaagtgcgatgtgcgaaattttgggt 11573906  T
Q  456 aaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||||| |||||||| |||||||||    
T  11573907 aaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctatgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 11573997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 367 - 546
Target Start/End: Original strand, 31133288 - 31133467
Alignment:
Q  367 tttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttca 466  Q
    |||| |||||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||| ||| |||||||  ||||||||||    
T  31133288 ttttcgttcaaaacccagtaggcaaccacaaagctccattttttttatccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttca 31133387  T
Q  467 ttccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||||||| ||||||||||||||  ||| ||||||||| | |||||||| ||||||||||| |||||||| |||||||||    
T  31133388 ttccaaattattgcaaatcgttataaaacaagtttctatgttcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 31133467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 407 - 538
Target Start/End: Complemental strand, 20927644 - 20927513
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  |||||||  ||||||| ||  ||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  20927644 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctacg 20927545  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatc 538  Q
    ||||||||| |||||| | || ||||||||||    
T  20927544 ctcatcaagcatcaaatatcaggtaatgtatc 20927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 401 - 538
Target Start/End: Original strand, 35000438 - 35000575
Alignment:
Q  401 tccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtt 500  Q
    |||||||||||||||| |||||||| |||||||  ||||||| ||| |||||||  ||||||||| ||||||||||||||||||||  |||||  ||||     
T  35000438 tccattttttctttccttccacctctaaaaacccaaaaagtgcgaacttttgggtcaaaatcttcgttccaaatcattgcaaatcgccaggaagcaagtc 35000537  T
Q  501 tctacgctcatcaagtatcaaagaacaagtaatgtatc 538  Q
    | ||| ||||||||| ||||||||||| ||||||||||    
T  35000538 tatacactcatcaagcatcaaagaacaggtaatgtatc 35000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 405 - 525
Target Start/End: Complemental strand, 22787916 - 22787796
Alignment:
Q  405 ttttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttcta 504  Q
    |||||||||||||||||||||||||||||   |||||| ||| |||||||  ||||||||||||| ||||||||||||||||| | |||  |||||||||    
T  22787916 ttttttctttccctccacctccaaaaacccataaagtgcgaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcatgaagtaagtttcta 22787817  T
Q  505 cgctcatcaagtatcaaagaa 525  Q
    ||||||||||| |||| ||||    
T  22787816 cgctcatcaagcatcatagaa 22787796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 407 - 515
Target Start/End: Complemental strand, 9829483 - 9829375
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| |||||||   ||||||| ||| |||||||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  9829483 ttttctttccctccaccttcaaaaactcaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 9829384  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  9829383 ctcatcaag 9829375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 8273259 - 8273322
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| | |||||||||||||||||||||| |||||| |||||||| | ||||||||||    
T  8273259 acccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgc 8273322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 22727694 - 22727739
Alignment:
Q  310 attcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||    
T  22727694 attcccaaagtaaatgacccaaatacccctacgtgagttaacatgc 22727739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 22788033 - 22787991
Alignment:
Q  308 tcattcccaaagtaaatgatcgaaatacccctacgtaagttaa 350  Q
    ||||||||||||||||||| | |||||||||||||| ||||||    
T  22788033 tcattcccaaagtaaatgaccaaaatacccctacgtgagttaa 22787991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 11712978 - 11713035
Alignment:
Q  298 atggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||| ||||||||||||||||||| |  | |||| |||||||||| ||||||||||    
T  11712978 atggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgc 11713035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 292 - 546
Target Start/End: Complemental strand, 31522599 - 31522345
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcactaatcattatttttgttcaaaatcctgtaggcaa 391  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||  |||  | |||||| |||||||| || | | ||||    
T  31522599 acccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaacttgcgttaagtactattttcgttcaaaacccagcaagcaa 31522500  T
Q  392 ccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttagg 491  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||    
T  31522499 ccacatagctccattttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttaattccaaatcattgcaaatcgtcagg 31522400  T
Q  492 aaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||| ||||||||| |||||||||| ||||||||||| |||||||| |||||||||    
T  31522399 aaacaagtttctatgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 31522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 365 - 546
Target Start/End: Complemental strand, 32275724 - 32275543
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  32275724 tattttcgttcaaaatccagcaggcaaccacaaagctccattttttcttttcctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatctt 32275625  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||||| ||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  32275624 cattccaaatctttgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaacatgtaatgtaccgtcaaaac 32275543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 522
Target Start/End: Complemental strand, 13543792 - 13543678
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtg-aaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctac 505  Q
    ||||||||||||||||||||||||||| |||||| ||| || |||| ||  |||||||| ||||||||||||||||||||| ||||||  ||| ||||||    
T  13543792 ttttctttccctccacctccaaaaacc-caaaag-gtgcaattttttggtcaaaatctttattccaaatcattgcaaatcggtaggaagcaagcttctac 13543695  T
Q  506 gctcatcaagtatcaaa 522  Q
    |||||||||| ||||||    
T  13543694 gctcatcaagcatcaaa 13543678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 32274199 - 32274261
Alignment:
Q  293 cccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  32274199 cccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgc 32274261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 32275833 - 32275772
Alignment:
Q  294 ccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||| | ||||||||||||    
T  32275833 ccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgcaagttaacatgc 32275772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 25400850 - 25400910
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||| |||| ||||    
T  25400850 caaatggttccgctcatttccaaagtaaatgttcaaaatacccctacgtaacttaagatgc 25400910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 546
Target Start/End: Complemental strand, 4321633 - 4321530
Alignment:
Q  435 caaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatg 534  Q
    ||||||||  |||||||||| |||||||||||||||||||||||        || ||  |||||||||||||||||||||  ||||||||||| ||||||    
T  4321633 caaaagtgcaaaattttgggtaaaaatcttcattccaaatcatt--------tttgggtaaaagtttctacgctcatcaatcatcaaagaacaggtaatg 4321542  T
Q  535 tatcgtcaaaac 546  Q
    || | |||||||    
T  4321541 taccatcaaaac 4321530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 14153368 - 14153431
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||| ||  ||||||||||||||||||||| | ||||||||||||| | ||||||||||    
T  14153368 acccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgc 14153431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 4319112 - 4319165
Alignment:
Q  306 gctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcacta 359  Q
    ||||||| | |||||||||||||||||| |||||||| | ||||||||||||||    
T  4319112 gctcattactaaagtaaatgatcgaaatgcccctacgcatgttaacatgcacta 4319165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 35060959 - 35060896
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||| ||||||||||| ||||||||||||  | |||| |||||||| | ||||||||||    
T  35060959 acccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgc 35060896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 7204001 - 7203956
Alignment:
Q  306 gctcattcccaaagtaaatgatcgaaatacccctacgtaagttaac 351  Q
    |||| |||||||||||||||||| ||||||||||||| | ||||||    
T  7204001 gctcgttcccaaagtaaatgatcaaaatacccctacgcatgttaac 7203956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 17436053 - 17436081
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaa 323  Q
    |||||||||||||||||||||||||||||    
T  17436053 caaatggttccgctcattcccaaagtaaa 17436081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 365 - 546
Target Start/End: Original strand, 23283337 - 23283518
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  23283337 tattttcgttcaaaatccagtatgcaaccataaagctccattttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatctt 23283436  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  23283437 cattctaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 23283518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 365 - 546
Target Start/End: Original strand, 36499082 - 36499263
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| |||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  36499082 tattttcgttcaaaaccaagcaggcaaccacaaagctccattttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatctt 36499181  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  36499182 cattccaaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaacaggtaatttaccgtcaaaac 36499263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 365 - 534
Target Start/End: Original strand, 55523901 - 55524070
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||    
T  55523901 tattttcgttcaaaacccagtaggcaaccacaaagctccattttttctttccctccacctgcaaaaaccccaaaagtgcgaaattttgggtaaaaatctt 55524000  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatg 534  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||| | ||||||    
T  55524001 cattccaaatcattgtaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaatatgtaatg 55524070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 389 - 546
Target Start/End: Original strand, 24972590 - 24972746
Alignment:
Q  389 caaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgtt 488  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  24972590 caaccacaaagctccatttt-tctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtc 24972688  T
Q  489 aggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||||| |||||||||||||||||||| |||||| |||| |||||||| |||||||||    
T  24972689 aggaaacaagtttctacgctcatcaagcatcaaataacaggtaatgtaccgtcaaaac 24972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 365 - 546
Target Start/End: Complemental strand, 45246934 - 45246753
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| ||||||||||| | ||||||||||||||||| | |||| ||||||||||||||||||||||   ||||||||||||||||||| |||||||||    
T  45246934 tattttcgttcaaaatccagcaggcaaccacaaagctcgacttttcctttccctccacctccaaaaactctaaaagtgtgaaattttgggtaaaaatctt 45246835  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||||| ||||||||||| |||||||| |||||||||    
T  45246834 cattccaaatcattgcaaatcgtcaagaaacaagtttccacgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 45246753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 365 - 514
Target Start/End: Original strand, 12586361 - 12586510
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| |||||||| || | | ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  12586361 tattttcgttcaaaacccagcatgcaaccataaaactccattttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatctt 12586460  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaa 514  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  12586461 cattccaaatcattgcaaatcgtcaggaaataagtttctacgctcatcaa 12586510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 407 - 535
Target Start/End: Complemental strand, 22182280 - 22182152
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||||||||||||  |||||||  |  |||| ||  ||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  22182280 ttttctttccctccacctccaaaaacccaaaaagtgcaattttttaggtcaaaatcttcattccaaatcattgcaaatcgttaagaagcaagtttctacg 22182181  T
Q  507 ctcatcaagtatcaaagaacaagtaatgt 535  Q
    ||||||||| |||||| | || |||||||    
T  22182180 ctcatcaagcatcaaatatcaggtaatgt 22182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 33990762 - 33990901
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||| ||||||| ||||||||  ||||||| ||  |||||||  |||||| |||| ||||||||||||||||||| | |||  |||||||||||    
T  33990762 ttttctttccttccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaatcaagtttctacg 33990861  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | |||||| |||||| |||||||    
T  33990862 ctcatcaagcaccaaatatcaagtattgtatcatcaaaac 33990901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 407 - 546
Target Start/End: Complemental strand, 50008936 - 50008797
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    ||||||||||||| |||| ||||||||  ||||||| ||  |||||||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  50008936 ttttctttccctcgaccttcaaaaaccaaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 50008837  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | || ||| |||||| |||||||    
T  50008836 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 50008797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Complemental strand, 43210129 - 43210023
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  43210129 ttttctttccctccaccttcaaaaacc--aaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 43210032  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  43210031 ctcatcaag 43210023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 1938580 - 1938688
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||| |||| ||||||||||||||||||| || || |||||||||| |    
T  1938580 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcagaaagaaagtttctatg 1938679  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  1938680 ctcatcaag 1938688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 41418911 - 41419019
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||| |||| |||||||||| |||||||||||||   |||||||||||    
T  41418911 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattacaaatcgttaggacgcaagtttctacg 41419010  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  41419011 ctcatcaag 41419019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 506
Target Start/End: Complemental strand, 156985 - 156886
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||| |||||||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  156985 ttttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 156886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 546
Target Start/End: Complemental strand, 50336331 - 50336192
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||| |||| ||||| ||||||||||||| | |||  ||||||||| |    
T  50336331 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaaccattgcaaatcgtcatgaagcaagtttctatg 50336232  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | || ||| |||||| |||||||    
T  50336231 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 50336192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 34235768 - 34235704
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgca 356  Q
    ||||||||||||||||||||||| ||||||||||| |||||| ||| |||| | |||||||||||    
T  34235768 acccaaatggttccgctcattcctaaagtaaatgaccgaaatgcccatacgcatgttaacatgca 34235704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 51719838 - 51719775
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| | |||| ||| ||||||||||| | ||||||||||||||||||||||||||||    
T  51719838 acccaaatggattcgcttatttccaaagtaaataaccgaaatacccctacgtaagttaacatgc 51719775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 54208196 - 54208253
Alignment:
Q  294 ccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaac 351  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||  ||||||||    
T  54208196 ccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaac 54208253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 33164569 - 33164506
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||||||||||||||| |||||||||||  | |||| |||||||| | ||||||||||    
T  33164569 acccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgc 33164506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 36501929 - 36501866
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||| |||| | ||||||||||||||||||||||||||||| |||||||| | ||| ||||||    
T  36501929 acccagatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttgacatgc 36501866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 12656515 - 12656630
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaat-------tttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagt 499  Q
    |||||||||||||||||| ||||||||  ||||||| ||| |       ||||||  |||||| | || ||||||||||||||||||| || ||  ||||    
T  12656515 ttttctttccctccaccttcaaaaacccaaaaagtgcgaagtgcgattttttgggtcaaaatccttatcccaaatcattgcaaatcgtcagaaagcaagt 12656614  T
Q  500 ttctacgctcatcaag 515  Q
    ||||||||||||||||    
T  12656615 ttctacgctcatcaag 12656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 24974196 - 24974147
Alignment:
Q  306 gctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||||||||||||||| |||||| |||||||| | ||||||||||    
T  24974196 gctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgc 24974147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 515
Target Start/End: Complemental strand, 6599469 - 6599373
Alignment:
Q  420 cacctccaaaaacctc-aaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaag 515  Q
    |||||||||||||| | |||| || ||| |||| || ||||||||||||| ||||||||||||| |||| |||||  | ||||||| ||| ||||||    
T  6599469 cacctccaaaaacccccaaaaatgcgaattttttggtaaaaatcttcatttcaaatcattgcaagtcgtcaggaagcaggtttctatgcttatcaag 6599373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 45247042 - 45246982
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||||| ||||| | ||||||||||||| ||||  ||||||||| ||||||||||    
T  45247042 caaatggttccgttcatttctaaagtaaatgatcaaaatgtccctacgtatgttaacatgc 45246982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 36172179 - 36172242
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||| ||||| ||||||||||||||||| |  | ||||||||||| ||| ||||||||||    
T  36172179 acccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaacatgc 36172242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 29348901 - 29348938
Alignment:
Q  395 caaagctccattttttctttccctccacctccaaaaacc 433  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29348901 caaagctccatttt-tctttccctccacctccaaaaacc 29348938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 23283231 - 23283291
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||| ||| |||| ||| ||||||||||||| |||||| |||||| | ||||||||||||    
T  23283231 caaatagtttcgcttatttccaaagtaaatgaccgaaatgcccctatgcaagttaacatgc 23283291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 295 - 546
Target Start/End: Complemental strand, 763355 - 763105
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcactaatc-attatttttgttcaaaatcctgtaggcaacc 393  Q
    |||||||||||||||||||||||| ||||| |  ||||| ||  |||| |||||||| |||| ||||  | |||||| ||||||||||| | ||||||||    
T  763355 caaatggttccgctcattcccaaaataaataactgaaatgcctatacgcaagttaacttgca-taatgtactattttcgttcaaaatccagcaggcaacc 763257  T
Q  394 acaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaa 493  Q
    ||||||||||||||||||||||||||||||| |||||  | |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  763256 acaaagctccattttttctttccctccaccttcaaaattc-caaaagtgcgaaattttggataaaaatcttcattccaaatcattgcaaatcgttaggaa 763158  T
Q  494 aaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    | || ||||||||||||||||| ||||||||| | |||||||| |||||||||    
T  763157 acaaatttctacgctcatcaagcatcaaagaataggtaatgtagcgtcaaaac 763105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 365 - 536
Target Start/End: Complemental strand, 30491697 - 30491525
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctc-aaaagtgtgaaattttgggcaaaaatct 463  Q
    |||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |  |||||||    
T  30491697 tattttcgttcaaaacccagcaggcaaccacaaagctccattttttctttccctccacctccaaaaacccccaaaagtgcgaaattttgagtcaaaatct 30491598  T
Q  464 tcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgta 536  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||| ||||||||    
T  30491597 tcattccaaatcattgcaaatcgtcaggagacaagtttctacgctcatcaagcatcaaagaacaggtaatgta 30491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 390 - 546
Target Start/End: Complemental strand, 34017555 - 34017399
Alignment:
Q  390 aaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgtta 489  Q
    |||||||||| ||||||||||||||| |||||||||||||||   ||||||||  |||||||||| ||||||||||||| |||||||||||||||||| |    
T  34017555 aaccacaaagttccattttttctttcactccacctccaaaaattccaaaagtgcaaaattttgggtaaaaatcttcatttcaaatcattgcaaatcgtca 34017456  T
Q  490 ggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34017455 ggaaacaagtttctacgctcatcaagcatcaaagaacatgtaatgtatcgtcaaaac 34017399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 389 - 544
Target Start/End: Original strand, 38739536 - 38739690
Alignment:
Q  389 caaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgtt 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||  ||||||||||||| |||||||||||||||||     
T  38739536 caaccacaaagctccattttttctttccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtc 38739635  T
Q  489 aggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaa 544  Q
    |||||| ||| |||||||||||||||| ||||||||||| |||||||| |||||||    
T  38739636 aggaaacaag-ttctacgctcatcaagcatcaaagaacaggtaatgtaccgtcaaa 38739690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 346 - 546
Target Start/End: Original strand, 5504874 - 5505068
Alignment:
Q  346 gttaacatgcactaatcattatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtga 445  Q
    ||||||||||| |||  | |||||| |||||||| || | |  ||||||||||||||||||||||  ||||||||||||||||||||  ||||||||  |    
T  5504874 gttaacatgcattaaatactattttcgttcaaaacccagcaaacaaccacaaagctccatttttt--ttccctccacctccaaaaactccaaaagtgcaa 5504971  T
Q  446 aattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaa 545  Q
    ||||||||| ||||||||||||    |||||||||||||||| || ||| | |||||||||||||||||| ||||||||||| |||||||| | ||||||    
T  5504972 aattttgggtaaaaatcttcat----aatcattgcaaatcgtcagaaaacaggtttctacgctcatcaagaatcaaagaacaggtaatgtaccatcaaaa 5505067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 366 - 502
Target Start/End: Complemental strand, 33144085 - 33143948
Alignment:
Q  366 atttttgttcaaaatcctgtaggcaaccacaaagctccatttttt-ctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    ||||| |||||||| || | || |||||||||| ||||||||||| |||||||||||||||||||| || ||||| || |||||||||||  ||||||||    
T  33144085 attttggttcaaaacccagcagacaaccacaaaactccatttttttctttccctccacctccaaaacccccaaaaatgcgaaattttgggtgaaaatctt 33143986  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttc 502  Q
    ||||||||||||||||||||||| || ||| |||||||    
T  33143985 cattccaaatcattgcaaatcgtcagaaaacaagtttc 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 515
Target Start/End: Complemental strand, 20887806 - 20887698
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||| ||||| ||||||||  ||||||| ||  ||||| |  |||||| |||| ||||||||||||||||||| ||||| ||||||||||||    
T  20887806 ttttctttccctacaccttcaaaaacccaaaaagtgggattttttgagtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagaaagtttctacg 20887707  T
Q  507 ctcatcaag 515  Q
    || ||||||    
T  20887706 cttatcaag 20887698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 32910585 - 32910724
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||| |||||||  |||||  |||| ||||| ||||||||||||| | |||  ||||||||||     
T  32910585 ttttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaattctcatcccaaaccattgcaaatcgtcatgaagcaagtttctaca 32910684  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | || ||| |||||| |||||||    
T  32910685 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 32910724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 15235137 - 15235047
Alignment:
Q  448 ttttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatc 538  Q
    |||||||  ||||||||||||||||||||||||||||||| || ||  |||||  ||| ||||||||| |||||| | |||||||||||||    
T  15235137 ttttgggtcaaaatcttcattccaaatcattgcaaatcgtcagaaagcaagttcatacactcatcaagcatcaaatatcaagtaatgtatc 15235047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 16109318 - 16109403
Alignment:
Q  406 tttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttagga 492  Q
    ||||||||||||||||||||||||||||  ||||||| ||  |||||||  |||||||||||||||||| |||| ||||||| ||||    
T  16109318 tttttctttccctccacctccaaaaacccaaaaagtgcgattttttgggtcaaaatcttcattccaaattattg-aaatcgtcagga 16109403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 28677913 - 28677963
Alignment:
Q  305 cgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  28677913 cgctcattcctaaagtaaatgaccgaaatacccctacgtaagttaacatgc 28677963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 515
Target Start/End: Complemental strand, 29195966 - 29195858
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  |||||||  |  |||| ||  || ||| |||| ||||||||||||||||||| || ||  |||||||||||    
T  29195966 ttttctttccctccaccttcaaaaacccaaaaagtgcaattttttaggtcaatatcctcatcccaaatcattgcaaatcgtcagaaagcaagtttctacg 29195867  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  29195866 ctcatcaag 29195858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 34017680 - 34017620
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||| |||| |||||||    
T  34017680 caaatggttccgctcattttcaaagtaaatgaccgaaatacccctacgcaagtaaacatgc 34017620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 34016020 - 34016083
Alignment:
Q  296 aaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcacta 359  Q
    |||||| | ||||||||||||||||||||||  ||||| |||||||  | ||||||||||||||    
T  34016020 aaatggattcgctcattcccaaagtaaatgactgaaatgcccctacacatgttaacatgcacta 34016083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 6706097 - 6706036
Alignment:
Q  294 ccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||| | |||||||| |||||||||||||  ||||| |||||||| | ||||||||||    
T  6706097 ccaaatggattcgctcatttccaaagtaaatgactgaaatgcccctacgcatgttaacatgc 6706036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 485
Target Start/End: Complemental strand, 8736550 - 8736470
Alignment:
Q  407 ttttctttccctc--cacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatc 485  Q
    |||||||||||||  ||||||||||||||  |||||||  || |||||    |||||||||||| ||||||||||||||||    
T  8736550 ttttctttccctctccacctccaaaaacccaaaaagtgcaaatttttgaatcaaaatcttcatttcaaatcattgcaaatc 8736470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 17636362 - 17636407
Alignment:
Q  296 aaatggttccgctcattcccaaagtaaatgatcgaaatacccctac 341  Q
    |||||| | |||||||||||||| |||||||| |||||||||||||    
T  17636362 aaatggattcgctcattcccaaaataaatgattgaaatacccctac 17636407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 5506740 - 5506692
Alignment:
Q  307 ctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||||||||||||||||||||| | |||||| | ||| ||||||    
T  5506740 ctcattcccaaagtaaatgatcgaaatgctcctacgcatgttgacatgc 5506692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 365 - 546
Target Start/End: Complemental strand, 7666870 - 7666689
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    ||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||    
T  7666870 tatttttgttcaaaacccagcaggcaaccactaagctccattttttctttccctccacctccaaaaacccaaaaagtgcgaaatttttgggtaaaatctt 7666771  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  7666770 cattccaaatcattgcaaatcatcaggaaataagtttctacgctcatcaagcatcaaagaacatgtaatgtaccgtcaaaac 7666689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 365 - 546
Target Start/End: Original strand, 35995262 - 35995443
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| |||||||| || | |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| | ||    
T  35995262 tattttcgttcaaaacccagcaggcaatcataaagctccattttttctttccctccacctccaaaaaccccaaaagtgtgaatttttgggtaaaattttt 35995361  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
     |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  35995362 tattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 35995443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 363 - 546
Target Start/End: Original strand, 35063090 - 35063272
Alignment:
Q  363 attatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatc 462  Q
    |||||||| |||||||| || | ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||    
T  35063090 attattttcgttcaaaacccagcaggcaaccacaaagctctattttttctttccctccacctccaaaaatcccaaaagtgcgaaattttgggtaaaaatc 35063189  T
Q  463 ttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    || | |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| | ||||||||| ||||||||    
T  35063190 tttaatccaaatcattgcaaatcgtca-gaaacaagtttctacgctcatcaagtatcaaagaataggtaatgtattgtcaaaac 35063272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 373 - 546
Target Start/End: Original strand, 19866917 - 19867090
Alignment:
Q  373 ttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctc-aaaagtgtgaaattttgggcaaaaatcttcattcca 471  Q
    ||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||    
T  19866917 ttcaaaacccagcaggcaaccacaa-gctccattttttctttccctccacctccaaaaacctccaaaagtgcgaaattttgggtgaaaatcttcattcca 19867015  T
Q  472 aatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||||||| |||| || |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  19867016 aatcattgtaaattgtcaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgtatcgtcaaaac 19867090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 389 - 546
Target Start/End: Complemental strand, 34086718 - 34086559
Alignment:
Q  389 caaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgtt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  34086718 caaccacaaagctccattttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtc 34086619  T
Q  489 aggaaaaaagtttct--acgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||||| ||||||||  ||||| || ||| ||||||||||   ||||||| |||||||||    
T  34086618 aggaaataagtttctacacgcttattaagcatcaaagaacggataatgtaccgtcaaaac 34086559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 426 - 546
Target Start/End: Complemental strand, 39649825 - 39649705
Alignment:
Q  426 caaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaa 525  Q
    |||||||  ||||||||  |||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||    
T  39649825 caaaaactccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaa 39649726  T
Q  526 caagtaatgtatcgtcaaaac 546  Q
     | |||||||| | |||||||    
T  39649725 taggtaatgtaccatcaaaac 39649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 407 - 515
Target Start/End: Complemental strand, 14443859 - 14443751
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||||||||||||  ||||||| ||  |||| ||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  14443859 ttttctttccctccacctccaaaaacccaaaaagtgcgattttttcggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagtaagtttctacg 14443760  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  14443759 ctcatcaag 14443751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 54335654 - 54335762
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  |||||||  || |||||||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  54335654 ttttctttccctccaccttcaaaaacccaaaaagtgcaaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 54335753  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  54335754 ctcatcaag 54335762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 407 - 546
Target Start/End: Complemental strand, 30933934 - 30933795
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  |||||||  |  |||||||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  30933934 ttttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 30933835  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | || ||| |||||| |||||||    
T  30933834 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 30933795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 11916930 - 11917038
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||| ||||||||||||| ||||||||  ||||||| ||| |||||||  |||||| |||| ||||||| ||||||||||| |||||  |||||||||||    
T  11916930 ttttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatctttgcaaatcgtcaggaagcaagtttctacg 11917029  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  11917030 ctcatcaag 11917038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 546
Target Start/End: Complemental strand, 20518188 - 20518049
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||| |||||||  |||||| |||| ||||| ||||| ||||||| | |||  |||||||||||    
T  20518188 ttttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaagcattgtaaatcgtcatgaagcaagtttctacg 20518089  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | || ||| |||||| |||||||    
T  20518088 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 20518049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 30528497 - 30528604
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||||||||||||  ||||||| ||  ||||||   ||||||||||||| ||||||||||||||||| |||||  |||||||||      
T  30528497 ttttctttccctccacctccaaaaacccaaaaagtgcgattttttggatcaaaatcttcattctaaatcattgcaaatcgtcaggaagcaagtttctata 30528596  T
Q  507 ctcatcaa 514  Q
    ||||||||    
T  30528597 ctcatcaa 30528604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 53767224 - 53767363
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  |||||||| |  |||||||  |||||  |||| ||||||||||||||||||| | |||  |||||||||||    
T  53767224 ttttctttccctccaccttcaaaaacccaaaaagtgtaattttttgggtcaaaattctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacg 53767323  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | || ||| |||||| |||||||    
T  53767324 ctcatcaagcaccaaatatcatgtattgtatcatcaaaac 53767363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 15040695 - 15040762
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcacta 359  Q
    |||||||||| | ||||||||||||||||||||||  ||||| |||||||| | ||||||||||||||    
T  15040695 acccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcacta 15040762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 4969889 - 4969948
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcg-aaatacccctacgtaagttaac 351  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||    
T  4969889 acccaaatggttccgctcattcccaaagtaaaag-tcgaaaatacccctacgtgagttaac 4969948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 6162746 - 6162683
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||||||||||||||||||||||||| |  | |||| |||||||| | ||||||||||    
T  6162746 acccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 6162683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 53814625 - 53814562
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| | |||||||||||||||||||||||| |||| |||||||| | ||||| ||||    
T  53814625 acccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaatatgc 53814562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 30533234 - 30533293
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaac 351  Q
    |||||||||||| |||||||||||||||||||||    |||||||||| ||| |||||||    
T  30533234 acccaaatggtttcgctcattcccaaagtaaatgtcacaaatacccctgcgtgagttaac 30533293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 2652982 - 2652950
Alignment:
Q  310 attcccaaagtaaatgatcgaaatacccctacg 342  Q
    ||||||||||||||||||| |||||||||||||    
T  2652982 attcccaaagtaaatgatcaaaatacccctacg 2652950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 13843657 - 13843621
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatc 328  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  13843657 acccaaatggtttcgctcattcccaaagtaaaagatc 13843621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 35062984 - 35063044
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||| |||||||||||  ||||||||||| |||||||  |||| | ||||||||||||    
T  35062984 caaatggatccgctcattcttaaagtaaatgaccgaaatattcctatgcaagttaacatgc 35063044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 35106039 - 35106011
Alignment:
Q  298 atggttccgctcattcccaaagtaaatga 326  Q
    |||||||||||||||||||||||||||||    
T  35106039 atggttccgctcattcccaaagtaaatga 35106011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 366 - 546
Target Start/End: Original strand, 1601 - 1782
Alignment:
Q  366 atttttgttcaaaatcctgtaggcaaccacaaagctccatttt-ttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    ||||| |||||||||||   ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  1601 attttcgttcaaaatccgccaggcaaccataaagctccatttttttctttccctccacctccaaaaaccccaaaagtgcgaatttttgggcaaaaatctt 1700  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
     |||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| |||||||| |||||||||    
T  1701 tattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcgaagaacatgtaatgtaccgtcaaaac 1782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 365 - 546
Target Start/End: Complemental strand, 33403047 - 33402866
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| ||||||||||| | ||||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||||||    
T  33403047 tattttcgttcaaaatccagcaggcaaccataaaactccattttttctttcgctccacctctaaaaaccccaaaagtgcgaaattttgggtaaaaatctt 33402948  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||||||||||||||| |  ||||| |||||||||||||||| ||| ||||||||||| |||||||| |||||||||    
T  33402947 cattccaaatcattgcaaatcttccggaaacaagtttctacgctcattaagcatcaaagaacaggtaatgtaccgtcaaaac 33402866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 365 - 546
Target Start/End: Complemental strand, 35577426 - 35577246
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| |||||||| || | ||||||||||| |||||| |||||||||| | |||||||||||||||| |||||||| |||||||| || ||||||  |    
T  35577426 tattttcgttcaaaacccagcaggcaaccacagagctcc-ttttttcttttcgtccacctccaaaaaccccaaaagtgcgaaatttttggtaaaaatact 35577328  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  35577327 cattccaaatcattgcaaatcgttaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 35577246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 365 - 546
Target Start/End: Original strand, 48025714 - 48025894
Alignment:
Q  365 tatttttgttcaaaatcctgt-aggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatct 463  Q
    ||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||    
T  48025714 tatttttgttcaaaa-cctatcagacaaccacaaagctccattttttctttccctccacctccaaaaccc-caaaagtgcgaaattttgggtaaaaatct 48025811  T
Q  464 tcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||||||||||||||||||||| | | |||| ||||||||| |||||||||| ||||||||||| ||||||||  ||||||||    
T  48025812 tcattccaaatcattgcaaatcatcaagaaacaagtttctatgctcatcaagcatcaaagaacaggtaatgtactgtcaaaac 48025894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 389 - 546
Target Start/End: Original strand, 25817598 - 25817755
Alignment:
Q  389 caaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgtt 488  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||  ||||||||| |||||||||||||||||||||     
T  25817598 caaccacacagctccattttttctttccctccacctccaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcgttccaaatcattgcaaatcgtc 25817697  T
Q  489 aggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |  ||  |||||||| ||||| ||||| |||| |||||| |||||||| |||||||||    
T  25817698 ataaagcaagtttctgcgctcgtcaagcatcatagaacaggtaatgtaccgtcaaaac 25817755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 406 - 546
Target Start/End: Original strand, 3368236 - 3368376
Alignment:
Q  406 tttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctac 505  Q
    ||||||||||||||||||||||||||||  ||||||| ||   ||||||  |||||||||||||  |||||||||||||| | |||||  ||||||||||    
T  3368236 tttttctttccctccacctccaaaaacccaaaaagtgcgattatttgggtcaaaatcttcattcataatcattgcaaatcatcaggaagcaagtttctac 3368335  T
Q  506 gctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
     || |||||| |||||| | ||||||||||||| |||||||    
T  3368336 acttatcaagcatcaaacatcaagtaatgtatcatcaaaac 3368376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Complemental strand, 16315266 - 16315158
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| || |||||  ||||||| ||  ||||||   ||||||||||| ||||||||||||||||||| |||||  |||||||||||    
T  16315266 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 16315167  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  16315166 ctcatcaag 16315158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 12063560 - 12063668
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||  ||| ||||||||  ||||||||||  |||||||  |||||| |||| ||||||||||||||||||| |||||  ||||||||||     
T  12063560 ttttctttccctcttccttcaaaaacccaaaaagtgtgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctaca 12063659  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  12063660 ctcatcaag 12063668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 23941635 - 23941774
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  |||||||  |  |||||||  |||| | |||| ||||||||||||||||||| |||||  |||||||||||    
T  23941635 ttttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaaccctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 23941734  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
     |||||||| | |||| | || ||| |||||| |||||||    
T  23941735 ttcatcaagcaccaaatatcaggtattgtatcatcaaaac 23941774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 28476046 - 28475983
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||  | ||||||||||    
T  28476046 acccaaatggttccgctcattctcaaagtaaatgatcgaaatgcccctacacatgttaacatgc 28475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 30704446 - 30704342
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||  ||||  |||||||||||||||||| |||||  ||||||||||     
T  30704446 ttttctttccctccaccttcaaaaacccaaaaagtgcgactttttgggtcaaaattctcatctcaaatcattgcaaatcgtcaggaagcaagtttctaca 30704347  T
Q  507 ctcat 511  Q
    |||||    
T  30704346 ctcat 30704342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 28446594 - 28446531
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| | ||||||||||||||||||||||  ||||| |||||||| | ||||||||||    
T  28446594 acccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgc 28446531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 45688324 - 45688385
Alignment:
Q  294 ccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||||| |||||||||||||||||| | || |||| |||||||| | ||||||||||    
T  45688324 ccaaatggttctgctcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgc 45688385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 18426440 - 18426397
Alignment:
Q  471 aaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaa 514  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  18426440 aaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 18426397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 28474806 - 28474873
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcacta 359  Q
    |||||||||| | | |||||||||||| |||||||  ||||| |||||||| | ||||||||||||||    
T  28474806 acccaaatggattcactcattcccaaaataaatgactgaaatgcccctacgcatgttaacatgcacta 28474873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 33617658 - 33617721
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| | ||||||||| |||||||||||| |||||| |||||| | | ||||||||||    
T  33617658 acccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaacatgc 33617721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 35563532 - 35563582
Alignment:
Q  305 cgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    ||||||||||||||||||||||  ||||| |||||||| | ||||||||||    
T  35563532 cgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgc 35563582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 325
Target Start/End: Complemental strand, 49033791 - 49033761
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatg 325  Q
    |||||||||||||||||||||||||||||||    
T  49033791 caaatggttccgctcattcccaaagtaaatg 49033761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 50065505 - 50065559
Alignment:
Q  305 cgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcacta 359  Q
    |||||||||||||||||||||| |||||| || || || | ||||||||||||||    
T  50065505 cgctcattcccaaagtaaatgaccgaaatgcctctgcgcatgttaacatgcacta 50065559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 28442939 - 28442967
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaa 323  Q
    |||||||||||||||||||||||||||||    
T  28442939 caaatggttccgctcattcccaaagtaaa 28442967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 365 - 546
Target Start/End: Complemental strand, 38289 - 38109
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| ||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||| |  |||||||  || ||||||| |||||||||    
T  38289 tattttcgttcaaaatccagtatgcaaccacacagctccattttt-ctttccctccacctccaaaaagccaaaaagtgcaaatttttgggtaaaaatctt 38191  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||  |||||||  ||||||||    
T  38190 cattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacatataatgtacagtcaaaac 38109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 6e-48; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 365 - 546
Target Start/End: Original strand, 34276368 - 34276548
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatctt 464  Q
    |||||| |||||||| || | ||||||||||||||||| ||||||| || ||||||||||||||||||| |||||| | ||||||||||| |||||||||    
T  34276368 tattttcgttcaaaacccagcaggcaaccacaaagctcaatttttt-ttcccctccacctccaaaaaccccaaaagagagaaattttgggtaaaaatctt 34276466  T
Q  465 cattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||||||||||||||||| | |||| |||||||||||| ||||||  ||||||||||| || ||||| |||||||||    
T  34276467 cattccaaatcattgcaaatcgtcatgaaacaagtttctacgcccatcaaccatcaaagaacaggtgatgtaccgtcaaaac 34276548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 14189780 - 14189890
Alignment:
Q  407 ttttctttccctcc--acctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttcta 504  Q
    ||||||||||||||  |||||||||| |   ||||||||||  |||||||  |||||||||||| |||||||||||||||||||||||| |||||| |||    
T  14189780 ttttctttccctccctacctccaaaatctcaaaaagtgtgattttttgggtcaaaatcttcatttcaaatcattgcaaatcgttaggaagaaagttacta 14189879  T
Q  505 cgctcatcaag 515  Q
    |||||||||||    
T  14189880 cgctcatcaag 14189890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Complemental strand, 24626172 - 24626064
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||| |||||||||||||   |||||||  |  ||||||| |||||||||||||||||||||||||||||| | | |||  |||||||||||    
T  24626172 ttttctttccctgcacctccaaaaacacaaaaagtgcaattttttgggtaaaaatcttcattccaaatcattgcaaatcatcatgaagcaagtttctacg 24626073  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  24626072 ctcatcaag 24626064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 33228293 - 33228370
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtg 442  Q
    |||||| |||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  33228293 tattttcgttcaaaacccagcaggcaaccacaaagctccattttttcttttcctccacctccaaaaacccaaaaagtg 33228370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 406 - 546
Target Start/End: Complemental strand, 2807296 - 2807157
Alignment:
Q  406 tttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctac 505  Q
    |||||||||||||||||||| |||| ||  ||||||   |  |||||||  ||||||||||||  |||||||||||||||||||||||  |||||  |||    
T  2807296 tttttctttccctccacctctaaaaccca-aaaagtacaattttttgggtcaaaatcttcatttgaaatcattgcaaatcgttaggaagcaagttcttac 2807198  T
Q  506 gctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    |||| ||||  ||||||||||| |||||||||| |||||||    
T  2807197 gctcgtcaaacatcaaagaacaggtaatgtatcatcaaaac 2807157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 538
Target Start/End: Original strand, 32075054 - 32075156
Alignment:
Q  436 aaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgt 535  Q
    ||||||||||| |||||||  |||||| |||| ||||||||||| ||||| | |||||  |||||||||||||||||||| |||||| | || |||||||    
T  32075054 aaaagtgtgaatttttgggtcaaaatcctcatcccaaatcattgtaaatcatcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgt 32075153  T
Q  536 atc 538  Q
    |||    
T  32075154 atc 32075156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 5967301 - 5967238
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  5967301 acccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgc 5967238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 538
Target Start/End: Complemental strand, 20532182 - 20532099
Alignment:
Q  455 caaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatc 538  Q
    ||||||| |||||||||||||||||||||| ||  ||||  |||||||||||||||||||| |||||| | || ||||||||||    
T  20532182 caaaaattttcattccaaatcattgcaaattgtatggaagcaagtttctacgctcatcaagcatcaaataccaggtaatgtatc 20532099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 522
Target Start/End: Complemental strand, 13868319 - 13868202
Alignment:
Q  407 ttttctttccctc--cacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttcta 504  Q
    |||||||||||||  |||||||||||||   |||||||  || |||||||  ||| |||||||| ||||||||||||||||||  ||||  |||||||||    
T  13868319 ttttctttccctctccacctccaaaaactcaaaaagtgcaaatttttgggtcaaattcttcatttcaaatcattgcaaatcgtggggaagtaagtttcta 13868220  T
Q  505 cgctcatcaagtatcaaa 522  Q
    | ||||||||| ||||||    
T  13868219 cactcatcaagcatcaaa 13868202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 31762258 - 31762322
Alignment:
Q  295 caaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgcacta 359  Q
    ||||||| | |||||||||||||||||||| | ||||||| ||||| | | ||||||||||||||    
T  31762258 caaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaacatgcacta 31762322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 20534421 - 20534374
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttggg 454  Q
    |||||||||||||||||| ||||||||  ||||||| |||||||||||    
T  20534421 ttttctttccctccaccttcaaaaacccaaaaagtgcgaaattttggg 20534374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 33220851 - 33220788
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||||| | ||||||||||||||||| | || |||| |||||||| | ||||||||||    
T  33220851 acccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgc 33220788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 34279621 - 34279562
Alignment:
Q  296 aaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||| | |||||||||| |||||||||||||||||| |||||||  | ||||||||||    
T  34279621 aaatggattcgctcattcctaaagtaaatgatcgaaatgcccctacacatgttaacatgc 34279562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 37687376 - 37687317
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaac 351  Q
    ||||||||||||||||||||| ||||||||||||  | ||||| || ||||| |||||||    
T  37687376 acccaaatggttccgctcatttccaaagtaaatgtccaaaatatccttacgtgagttaac 37687317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 478
Target Start/End: Original strand, 41601120 - 41601191
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcatt 478  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||| |||| ||||||||||    
T  41601120 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcatt 41601191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 386 - 546
Target Start/End: Complemental strand, 2369818 - 2369658
Alignment:
Q  386 aggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatc 485  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||  ||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  2369818 aggcaaccacacaactccattttttctttccctccacctctaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcattccaaatcattgcaaatc 2369719  T
Q  486 gttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    || | |||  |||||||||| ||||||||| ||||||||||| |||||||||| |||||||    
T  2369718 gtcatgaagcaagtttctacactcatcaagcatcaaagaacaggtaatgtatcctcaaaac 2369658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 375 - 546
Target Start/End: Complemental strand, 4452553 - 4452382
Alignment:
Q  375 caaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaat 474  Q
    |||||||| | ||||||||||| | |||||||||||||||||||||| |||||||||||  ||||||| ||| |||||||  ||||||||||||||||||    
T  4452553 caaaatccagcaggcaaccacacaactccattttttctttccctccatctccaaaaacccaaaaagtgcgaatttttgggtcaaaatcttcattccaaat 4452454  T
Q  475 cattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
     |||||||||| | |||||  ||||||||||  |||||||| ||||||||||| ||||| |||  |||||||    
T  4452453 aattgcaaatcatcaggaagcaagtttctacattcatcaagcatcaaagaacaggtaatatattctcaaaac 4452382  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 375 - 485
Target Start/End: Complemental strand, 4452873 - 4452765
Alignment:
Q  375 caaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaat 474  Q
    |||||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||  || |||||||  ||||||||||||||||||    
T  4452873 caaaatccagcaggcaaccacaa--ctccattttttctttccctccacctccaaaaacctaaaaagtgcaaatttttgggtcaaaatcttcattccaaat 4452776  T
Q  475 cattgcaaatc 485  Q
     ||||||||||    
T  4452775 aattgcaaatc 4452765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 44222009 - 44222148
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||| |||| ||||||||||||||||||| |||||  |||||||||||    
T  44222009 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 44222108  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| |||||| | || ||| |||||| |||||||    
T  44222109 ctcatcaagcatcaaatatcaggtattgtatcatcaaaac 44222148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 23941343 - 23941482
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||| |||| ||  |||||| |||| ||||||||||||||||||| | |||  |||||||||||    
T  23941343 ttttctttccctccaccttcaaaaacccaaaaagtgcgaattttttggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacg 23941442  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
    ||||||||| | |||| | || ||| |||||| |||||||    
T  23941443 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 23941482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 4278602 - 4278711
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaa-aaagtttctac 505  Q
    |||||||||||||||||| |||||||| |||||||| ||| |||| ||  |||||| |||| ||||||||||||| ||||| ||||||  ||||||||||    
T  4278602 ttttctttccctccaccttcaaaaaccccaaaagtgagaattttttggtcaaaatcctcatcccaaatcattgcacatcgtcaggaaagtaagtttctac 4278701  T
Q  506 gctcatcaag 515  Q
    ||||||||||    
T  4278702 gctcatcaag 4278711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 10526937 - 10526856
Alignment:
Q  365 tatttttgttcaaaatcctgtaggcaaccacaaagctccattttttctttccctccacctccaaaaacctcaaaagtgtgaa 446  Q
    |||||| | |||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  10526937 tattttcgatcaaaacccagcaggcaaccacaaagctccattttttctttccctccacctccaaaaatccaaaaagtgtgaa 10526856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 11356339 - 11356478
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||||||||||||||||| ||||||||  ||||||| ||  |||||||  |||||  |||| ||||||||||||||||| | |||||  |||||||||||    
T  11356339 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaattctcatcccaaatcattgcaaatcatcaggaagcaagtttctacg 11356438  T
Q  507 ctcatcaagtatcaaagaacaagtaatgtatcgtcaaaac 546  Q
     |||||||| | |||| | || ||| |||||| |||||||    
T  11356439 ttcatcaagcaccaaatatcaggtattgtatcatcaaaac 11356478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 477
Target Start/End: Complemental strand, 13070579 - 13070509
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcat 477  Q
    |||||||||||||||||||||||||||  ||||||||||  |||||||  |||||||||||||||||||||    
T  13070579 ttttctttccctccacctccaaaaacccaaaaagtgtgattttttgggtcaaaatcttcattccaaatcat 13070509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 5236 - 5173
Alignment:
Q  292 acccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||||| | |||||||||||||||||||||| |||||| |||||||| | ||||||||||    
T  5236 acccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgc 5173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 12868664 - 12868722
Alignment:
Q  457 aaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacgctcatcaag 515  Q
    |||||||||||| ||||||||| |||||||| |||||  |||||||||| |||||||||    
T  12868664 aaaatcttcatttcaaatcattacaaatcgtgaggaagtaagtttctacactcatcaag 12868722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 31730907 - 31731015
Alignment:
Q  407 ttttctttccctc--cacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttcta 504  Q
    |||||||||||||  ||||||||||||||  || |||| ||| || ||||  || ||||||||| || ||||||||||||||| |||||  |||||||||    
T  31730907 ttttctttccctctccacctccaaaaacccaaagagtgcgaa-ttgtgggtcaatatcttcatttcatatcattgcaaatcgtcaggaagcaagtttcta 31731005  T
Q  505 cgctcatcaa 514  Q
    | ||||||||    
T  31731006 cactcatcaa 31731015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 38386190 - 38386251
Alignment:
Q  294 ccaaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgc 355  Q
    |||||||| | |||||||| |||||||||||||| ||||| |||||||| | ||||||||||    
T  38386190 ccaaatggattcgctcatttccaaagtaaatgattgaaatgcccctacgcatgttaacatgc 38386251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 538
Target Start/End: Complemental strand, 23562362 - 23562298
Alignment:
Q  474 tcattgcaaatcgttaggaaaaaagtttctacgctcatcaagtatcaaagaacaagtaatgtatc 538  Q
    ||||| ||||||||||| ||  |||||||||||||||||||| || ||| | |||||||||||||    
T  23562362 tcatttcaaatcgttagaaagcaagtttctacgctcatcaagcattaaaaatcaagtaatgtatc 23562298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 5060864 - 5060893
Alignment:
Q  294 ccaaatggttccgctcattcccaaagtaaa 323  Q
    ||||||||||||||||||||||||||||||    
T  5060864 ccaaatggttccgctcattcccaaagtaaa 5060893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 20379728 - 20379668
Alignment:
Q  296 aaatggttccgctcattcccaaagtaaatgatcgaaatacccctacgtaagttaacatgca 356  Q
    |||||||||||||||||||||||||||| |  | |||| |||||||| || |||| |||||    
T  20379728 aaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcaacttaatatgca 20379668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 8681 - 8789
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    |||| ||||||||||||| ||||||||  ||||||| ||| |||||||  |||||| |||| ||||||| ||||||||||| |||||  |||||||||||    
T  8681 ttttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatctttgcaaatcgtcaggaagcaagtttctacg 8780  T
Q  507 ctcatcaag 515  Q
    |||||||||    
T  8781 ctcatcaag 8789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 407 - 509
Target Start/End: Original strand, 2061 - 2163
Alignment:
Q  407 ttttctttccctccacctccaaaaacctcaaaagtgtgaaattttgggcaaaaatcttcattccaaatcattgcaaatcgttaggaaaaaagtttctacg 506  Q
    ||||||||||||||||||  |||||||  ||||||| ||  ||||||| ||||||  ||||   ||||||||||||||||| |||||  |||||||||||    
T  2061 ttttctttccctccacctttaaaaacccaaaaagtgcgattttttgggtaaaaatgctcatcttaaatcattgcaaatcgtcaggaagcaagtttctacg 2160  T
Q  507 ctc 509  Q
    |||    
T  2161 ctc 2163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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