View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1682_low_11 (Length: 231)
Name: NF1682_low_11
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1682_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 11195954 - 11195763
Alignment:
| Q |
18 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
117 |
Q |
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| T |
11195954 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
11195855 |
T |
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| Q |
118 |
aatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaa |
209 |
Q |
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| T |
11195854 |
aatgataaggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaa |
11195763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 11155507 - 11155316
Alignment:
| Q |
18 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
117 |
Q |
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| T |
11155507 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgctata |
11155408 |
T |
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| Q |
118 |
aatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaa |
209 |
Q |
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| T |
11155407 |
aatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgttaa |
11155316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 11165561 - 11165377
Alignment:
| Q |
16 |
agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcga |
115 |
Q |
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| T |
11165561 |
agagaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagaggtacgcatacaatatgagggattcca |
11165462 |
T |
|
| Q |
116 |
taaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggct |
200 |
Q |
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| T |
11165461 |
taaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtctttaagtggct |
11165377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 11208620 - 11208426
Alignment:
| Q |
6 |
gaggaggagcagagaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatg |
105 |
Q |
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||||| || ||| ||||||||||| |||||||||||||||| |||| ||| ||||||| | ||| ||||| ||| | |||||||||| |||||||| ||| |
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| T |
11208620 |
gaggatgatcagtgaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaatatg |
11208521 |
T |
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| Q |
106 |
aggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggct |
200 |
Q |
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| T |
11208520 |
agggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtcttcatgtggct |
11208426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 11169788 - 11169594
Alignment:
| Q |
16 |
agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgagg-aatgcg |
114 |
Q |
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||||||||||| || |||||||||||||||| |||| ||| ||||||| | ||||||||| ||| | |||||| ||| |||||||| |||||| ||| | |
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| T |
11169788 |
agagaagctgacaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattc- |
11169690 |
T |
|
| Q |
115 |
ataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaat |
210 |
Q |
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| T |
11169689 |
ataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaat |
11169594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 11132225 - 11132051
Alignment:
| Q |
18 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
117 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| | ||| ||| ||| ||||||| |||||| |||||||||||||| ||| |
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| T |
11132225 |
agaagctgagaagtacaaggatgaagacaagatgtataggaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgccata |
11132126 |
T |
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| Q |
118 |
aatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtctta |
192 |
Q |
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| T |
11132125 |
aacgataaggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtctta |
11132051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 11275169 - 11274978
Alignment:
| Q |
19 |
gaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataa |
118 |
Q |
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|||||||||||||||||||||||||||| ||| ||| ||| ||| | ||||||||| ||| | |||||||||| |||||||| |||||| || |||| |
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| T |
11275169 |
gaagctgagaagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataa |
11275070 |
T |
|
| Q |
119 |
atgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaat |
210 |
Q |
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||||| ||||||| | ||||||||| | ||||||||||||||| |||||||| |||| |||||||||||| | |||||| || |||||| |
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| T |
11275069 |
atgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaat |
11274978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 11242021 - 11242146
Alignment:
| Q |
86 |
agaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaa--agaaaaggaaaagatcaataaagcaattgat |
183 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||||||||| | | ||||||||||| ||| | ||||||||||||| |||||||||||| || |
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| T |
11242021 |
agaagtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-at |
11242119 |
T |
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| Q |
184 |
ttggtcttaaggtggctcgatgttaat |
210 |
Q |
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| T |
11242120 |
ttggtcttcacatggcttgatgttaat |
11242146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 11315745 - 11315841
Alignment:
| Q |
90 |
gtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttg |
186 |
Q |
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|||||||||||| |||| | |||| || ||||||||||||||||| || | ||||| ||||||||||||| ||||||||||| | ||||||| |||| |
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| T |
11315745 |
gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaatgatgcaattggtttg |
11315841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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