View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1682_low_4 (Length: 400)
Name: NF1682_low_4
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1682_low_4 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 11849597 - 11849980
Alignment:
| Q |
11 |
caaaggcctacaaactatatgatccagtttccaagaaagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11849597 |
caaaggcctacaaactatatgatccagtttccaagaaagtaatcattagtaaggatgtgatttttgaagaagatgtatgttggaactggaacaaccaaaa |
11849696 |
T |
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| Q |
111 |
agatgaatgtaggccagatcttttagagtggaaaaatgattatgagattggcattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagc |
210 |
Q |
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| T |
11849697 |
agatgaatgcaggccagatcttttagagtggaaaaatgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagc |
11849796 |
T |
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| Q |
211 |
aatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcattaggatgactcacccaatgtcgttgaagggagggtaagaaaaacac |
310 |
Q |
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| T |
11849797 |
aatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcatgaggatgactcacccaatgtcgttgaagggagggtaagaaaaacac |
11849896 |
T |
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| Q |
311 |
cttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgatgatg |
394 |
Q |
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| T |
11849897 |
cttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgaagatg |
11849980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 5876271 - 5876640
Alignment:
| Q |
11 |
caaaggcctacaaactatatgatccagtttccaagaaagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876271 |
caaaggcctacaaactatatgatccagtttccaagaaagtaatcattagtaaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaa |
5876370 |
T |
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| Q |
111 |
agatgaatgtaggccagatcttttagagtggaaaaatgattatgagattggcattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagc |
210 |
Q |
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| T |
5876371 |
agatgaatgcaggc--------------tggaaaaatgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagc |
5876456 |
T |
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| Q |
211 |
aatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcattaggatgactcacccaatgtcgttgaagggagggtaagaaaaacac |
310 |
Q |
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| T |
5876457 |
aatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcatgaggatgactcacccaatgtcgttgaagggagggtaagaaaaaaac |
5876556 |
T |
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| Q |
311 |
cttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgatgatg |
394 |
Q |
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| T |
5876557 |
cttcatggatggcatattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgaagatg |
5876640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 26554170 - 26554328
Alignment:
| Q |
11 |
caaaggcctacaaactatatgatccagtttccaagaaagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaa |
110 |
Q |
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|||||||||||| ||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||| ||| ||||| ||||||| || |
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| T |
26554170 |
caaaggcctacaggttatatgatccaatttccaagaaaataatcattagcaaagatgtgatttttgaagaagatgaatgctggaattgggacagaagcaa |
26554269 |
T |
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| Q |
111 |
agatgaatgtaggccagatcttttagagtggaaaaatgattatgagattggcattgaag |
169 |
Q |
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| T |
26554270 |
agaggaatgtagtctggatgttttagagttcaaaaatgattccgagaatgacattgaag |
26554328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 377
Target Start/End: Original strand, 26554438 - 26554527
Alignment:
| Q |
288 |
tgaagggagggtaagaaaaacaccttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgat |
377 |
Q |
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| T |
26554438 |
tgaagggagggtaagaagaccaccgtgttggatggaagactatgaaacaggtgaaggtttgtcagatgaagatggtatgaatgcaatgat |
26554527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 1681 - 1606
Alignment:
| Q |
314 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
389 |
Q |
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| T |
1681 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
1606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 7125 - 7050
Alignment:
| Q |
314 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
389 |
Q |
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| T |
7125 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
7050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 389
Target Start/End: Original strand, 14246301 - 14246376
Alignment:
| Q |
314 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
389 |
Q |
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| T |
14246301 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
14246376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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