View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1682_low_5 (Length: 394)

Name: NF1682_low_5
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1682_low_5
NF1682_low_5
[»] chr4 (11 HSPs)
chr4 (321-391)||(51722411-51722481)
chr4 (14-100)||(19114134-19114220)
chr4 (14-100)||(30310144-30310230)
chr4 (14-89)||(48031509-48031584)
chr4 (14-96)||(7473105-7473187)
chr4 (14-96)||(8934800-8934882)
chr4 (14-96)||(19644689-19644771)
chr4 (14-96)||(33988128-33988210)
chr4 (120-190)||(51722161-51722231)
chr4 (25-96)||(29554100-29554171)
chr4 (246-295)||(51722323-51722372)
[»] chr2 (4 HSPs)
chr2 (14-100)||(15017374-15017460)
chr2 (21-100)||(5325464-5325543)
chr2 (14-96)||(10978363-10978446)
chr2 (25-100)||(22725790-22725865)
[»] chr6 (6 HSPs)
chr6 (14-96)||(5086383-5086465)
chr6 (14-96)||(33019679-33019761)
chr6 (14-95)||(503892-503973)
chr6 (14-96)||(33639616-33639698)
chr6 (23-96)||(8263953-8264026)
chr6 (14-96)||(19227212-19227294)
[»] chr7 (7 HSPs)
chr7 (21-96)||(6970710-6970785)
chr7 (14-84)||(21439281-21439351)
chr7 (14-96)||(25923769-25923851)
chr7 (25-96)||(17804655-17804726)
chr7 (14-96)||(34518964-34519046)
chr7 (14-96)||(45987748-45987830)
chr7 (56-96)||(33796727-33796767)
[»] chr5 (3 HSPs)
chr5 (37-100)||(11575049-11575112)
chr5 (14-96)||(5415505-5415587)
chr5 (22-96)||(22095610-22095684)
[»] chr3 (2 HSPs)
chr3 (14-100)||(20894110-20894196)
chr3 (14-96)||(51144763-51144845)
[»] chr8 (2 HSPs)
chr8 (23-96)||(36318850-36318923)
chr8 (14-96)||(4988425-4988507)
[»] scaffold0108 (1 HSPs)
scaffold0108 (14-96)||(10607-10689)
[»] chr1 (4 HSPs)
chr1 (21-96)||(34709275-34709350)
chr1 (14-96)||(24314718-24314800)
chr1 (14-96)||(25505353-25505435)
chr1 (25-96)||(43810519-43810590)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 51722411 - 51722481
Alignment:
Q  321 ttattattgcaggtctgctcttttagggattcatatgagaagttcaagaaagcaggagcagaggttgttgg 391  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51722411 ttattattgcaggcctgtgcttttagggattcatatgagaagttcaagaaagcaggagcagaggttgttgg 51722481  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 19114134 - 19114220
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 100  Q
    |||||| |||||||||| |||  |||||||||||| |||| |||| ||||||||||||||||||||||||| || ||| ||||||||    
T  19114134 aacctgggcaaaggagtcacatgattattaaaacacctattgttatgttcagtccataagacccagacacaaagtagcaaaattagt 19114220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 30310144 - 30310230
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 100  Q
    |||||| |||||||||| | |  |||||||||||| |||| |||||||||||||||||||||  |||||||||| ||||||||||||    
T  30310144 aacctgggcaaaggagtcatatgattattaaaacacctattgttacgttcagtccataagacagagacacagagtagccaaattagt 30310230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 48031584 - 48031509
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaa 89  Q
    |||||| |||||||||||| ||||||||  ||||| ||||  |||||||||||||||||||||||| || ||||||    
T  48031584 aacctgggcaaaggagtaatagaattatcgaaacacctattattacgttcagtccataagacccaggcaaagagaa 48031509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 7473105 - 7473187
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||| ||||||||||||||||||| ||||| |||||    
T  7473105 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcattccataagacccagacacaaagaagtcaaat 7473187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 8934800 - 8934882
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| | ||| ||| |||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  8934800 aacctgggtaaaggagtaataaaatcattgaaacacatattgttacgttcagtccataagacccaggcacaaagaagccaaat 8934882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 19644689 - 19644771
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  19644689 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 19644771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 33988210 - 33988128
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  |||  ||||||||||||||||| ||||||||||| |||||||||||    
T  33988210 aacctgggtaaaggagtaatagaatcattgaaacacatattattacgttcagtccataaaacccagacacaaagaagccaaat 33988128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 51722161 - 51722231
Alignment:
Q  120 gcgttttagaattgctttatctttttagtttcaatccgcattagaagagttctcatgttttaaccaatatt 190  Q
    ||||||||||| |||||||||||||  |||||||||| ||| |||||||||||||  ||||| ||||||||    
T  51722161 gcgttttagaactgctttatcttttctgtttcaatccacatcagaagagttctcaaattttatccaatatt 51722231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 29554171 - 29554100
Alignment:
Q  25 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||||| ||||||||| ||  | ||||  ||||||||||||||||| |||||| |||| |||||||||||    
T  29554171 aggagtaatagaattattgaacaacctattattacgttcagtccataatacccaggcacaaagaagccaaat 29554100  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 51722323 - 51722372
Alignment:
Q  246 catgaaattagattatgcacagtagagcaaatacaataaatcatttccat 295  Q
    |||| ||| |||||||||| ||||||||||||||||||||  ||||||||    
T  51722323 catggaatcagattatgcagagtagagcaaatacaataaactatttccat 51722372  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 15017374 - 15017460
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 100  Q
    |||||| |||||||||| |||  |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  15017374 aacctgggcaaaggagtcacatgattattaaaacacctattgttacgttcagtccataagacccagacacagagtagccaaattagt 15017460  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 5325464 - 5325543
Alignment:
Q  21 gcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 100  Q
    |||||| ||||||  ||||||||||||| |||| |||||||||| ||||||||| |||||||||||| ||||||||||||    
T  5325464 gcaaagaagtaacgtaattattaaaacacctattgttacgttcaatccataagatccagacacagagtagccaaattagt 5325543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 10978446 - 10978363
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctata-gttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  |||  ||||||| ||||||||||||||||||||||||||||||||||    
T  10978446 aacctgggtaaaggagtaatagaatcattgaaacacatatttgttacgtccagtccataagacccagacacagagaagccaaat 10978363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 22725865 - 22725790
Alignment:
Q  25 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 100  Q
    |||||||| || |||||||||  | |||| ||||| ||||||||||||||||||  ||||  ||||||||||||||    
T  22725865 aggagtaatagtattattaaataacctattgttacattcagtccataagacccaagcacaaggaagccaaattagt 22725790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 5086465 - 5086383
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| |||||||||||||| |||||||||||||  ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  5086465 aacctgggcaaaggagtaacataattattaaaacacttattgttacgttcagtccataaaacccagacacagagtagccaaat 5086383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 33019679 - 33019761
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||| || |||||    
T  33019679 aacctgggcaaaggagtaacataattattaaaacacctattgttacgttcagtccataagacctagacacagagtaggcaaat 33019761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 503973 - 503892
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaa 95  Q
    |||||| | |||||||||| ||||| ||| |||||  |||  |||||||||||||||||||||||| |||||||||||||||    
T  503973 aacctgggtaaaggagtaatagaatcattgaaacacatattattacgttcagtccataagacccaggcacagagaagccaaa 503892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 33639616 - 33639698
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  33639616 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataatacccaggcacaaagaagccaaat 33639698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 8263953 - 8264026
Alignment:
Q  23 aaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||||||| ||||| ||| |||||  ||| |||||||||||||||||||| |||| || |||||||||||||    
T  8263953 aaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagatccaggcatagagaagccaaat 8264026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 19227212 - 19227294
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||  ||| |||||  ||| |||||||||||||||||| |||||  |||| |||||||||||    
T  19227212 aacctgagtaaaggagtaatagaagcattgaaacacatattgttacgttcagtccataaaacccaagcacaaagaagccaaat 19227294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 6970710 - 6970785
Alignment:
Q  21 gcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    ||||||||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||||| || ||||||||    
T  6970710 gcaaaggagtaacagaattattaaaacacttattgttacgttgagtccataagacccagacacaaagtagccaaat 6970785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 21439351 - 21439281
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacaca 84  Q
    |||||| |||||||||| |||  |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  21439351 aacctgggcaaaggagtcacatgattattaaaacacctattgttacgttcagtccataagacccagacaca 21439281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 25923769 - 25923851
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  25923769 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagacccaggcacaaagaagccaaat 25923851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 17804655 - 17804726
Alignment:
Q  25 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||| ||| ||||| ||| |||||  ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17804655 aggaataatagaatcattgaaacacatattgttacgttcagtccataagacccaggcacagagaagccaaat 17804726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 34519046 - 34518964
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  34519046 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 34518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 45987748 - 45987830
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  45987748 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 45987830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 33796767 - 33796727
Alignment:
Q  56 ttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||||||||| |||| ||||||||||| |||||||||||    
T  33796767 ttacgttcagtctataaaacccagacacaaagaagccaaat 33796727  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 11575112 - 11575049
Alignment:
Q  37 attattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 100  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  11575112 attattaaaacacctattgttacgttcagtccataagacccagacacagagtagccaaattagt 11575049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 5415587 - 5415505
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  5415587 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagacccaggcacaaagaagccaaat 5415505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 22095684 - 22095610
Alignment:
Q  22 caaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    ||||||| ||| ||||||||| ||||| |||| |||||||||||||||||| ||||| ||||| |||||||||||    
T  22095684 caaaggaataatagaattattgaaacacctattgttacgttcagtccataaaacccaaacacaaagaagccaaat 22095610  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 20894196 - 20894110
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 100  Q
    |||||| ||||||||||||||   |||||||||||  ||| |||||||||||||||||||||||| ||||| || ||||||||||||    
T  20894196 aacctgggcaaaggagtaacatggttattaaaacacttattgttacgttcagtccataagacccaaacacaaagtagccaaattagt 20894110  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 51144763 - 51144845
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| |||||||||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||||| || ||||||||    
T  51144763 aacctgggcaaaggagtaatagaattattgaaacacctattgttacgttcagtccataaaactcaaacacaaagtagccaaat 51144845  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 36318923 - 36318850
Alignment:
Q  23 aaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||||||| ||||| ||| |||||  ||| ||||||||||||||||||||| |||||||||||||| |||||    
T  36318923 aaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagacgcagacacagagaagtcaaat 36318850  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 4988507 - 4988425
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| |||||  || |||||  ||| |||||||||||||||||| |||||| ||||  ||||||||||    
T  4988507 aacctgggtaaaggagtaatagaatcgttgaaacacatattgttacgttcagtccataaaacccaggcacaacgaagccaaat 4988425  T

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Target: scaffold0108 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 10607 - 10689
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  10607 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 10689  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 34709350 - 34709275
Alignment:
Q  21 gcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||||||||| ||||||||| ||||| || | |||||||||||||||||  || ||||||||||| || |||||    
T  34709350 gcaaaggagtaaaagaattattgaaacacctgttgttacgttcagtccatagaactcagacacagaggagtcaaat 34709275  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 24314718 - 24314800
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| ||| |  ||| ||||||||||||||||||||| ||| |||| |||||||||||    
T  24314718 aacctgggtaaaggagtaatagaatcattgaaaaacatattgttacgttcagtccataagactcaggcacaaagaagccaaat 24314800  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 25505435 - 25505353
Alignment:
Q  14 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||| ||||||| |||||||||||| |||| |||||||||||    
T  25505435 aacctgggtaaaggagtaatagaatcattgaaacacatattgttatgttcagttcataagacccaggcacaaagaagccaaat 25505353  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 43810519 - 43810590
Alignment:
Q  25 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 96  Q
    |||||||| ||||||||| ||  | ||||  ||||||||||||||||| |||||| |||| |||||||||||    
T  43810519 aggagtaatagaattattgaacaacctattattacgttcagtccataacacccaggcacaaagaagccaaat 43810590  T

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