View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1682_low_6 (Length: 392)
Name: NF1682_low_6
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1682_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 27 - 377
Target Start/End: Original strand, 36607328 - 36607674
Alignment:
| Q |
27 |
ggacaatatttgtgttccatgattttattatatgatgttgaaaattatattcataaatagcattatactactaatttccaaatttaaattcagaagaagc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36607328 |
ggacaatatttgtgttccatgattttattatatgatgttgaaaattatattcataaatagcattatactactaatttccaaatttaaattcagaagaagc |
36607427 |
T |
|
| Q |
127 |
gtaacttggaaagtttggaccccgtttgaaaaggatgtcatgttcattcatgttcttagttgagattctcaaatgacttaagaaatactatacgtgcaat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36607428 |
gtaacttggaaagtttggaccccgtttgaaaaggatgtcatgttcattcatgttcttagttgagattctcaaatgacttaagaaatactatacgtgcaat |
36607527 |
T |
|
| Q |
227 |
ttagttgttacgaccattgaagtttgacaaacaataattgaaacaaatgcaattatgcaacgatattattggtaggtatatagatattttttgtgtgaag |
326 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36607528 |
ttagttgttacaaccattgaagtttgacaaacaataattgaaacaaatgcaattatgcaacgatattattggtaggtatatagatattttttgtgtgaag |
36607627 |
T |
|
| Q |
327 |
aatgtaagagtaactctacccataattatttattacctgaagagtgaaact |
377 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36607628 |
aatgtaagagtaactctacccataa----ttattacctgaagagtgaaact |
36607674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University