View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1682_low_8 (Length: 337)

Name: NF1682_low_8
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1682_low_8
NF1682_low_8
[»] chr3 (2 HSPs)
chr3 (159-312)||(28524938-28525091)
chr3 (1-85)||(28524780-28524864)
[»] chr5 (1 HSPs)
chr5 (248-288)||(4991146-4991186)
[»] chr7 (3 HSPs)
chr7 (248-287)||(38957343-38957382)
chr7 (246-287)||(23948409-23948450)
chr7 (246-287)||(44287865-44287906)
[»] chr4 (2 HSPs)
chr4 (249-288)||(54779171-54779210)
chr4 (255-287)||(36768850-36768882)
[»] chr8 (2 HSPs)
chr8 (246-287)||(20154076-20154117)
chr8 (246-287)||(20203353-20203394)
[»] chr6 (3 HSPs)
chr6 (248-285)||(34879469-34879506)
chr6 (247-283)||(585725-585761)
chr6 (249-281)||(32577471-32577503)
[»] chr2 (1 HSPs)
chr2 (249-309)||(35198210-35198270)
[»] chr1 (1 HSPs)
chr1 (247-287)||(2252469-2252508)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 159 - 312
Target Start/End: Original strand, 28524938 - 28525091
Alignment:
Q  159 aatgtataatggaaaagttgttattttgccccattaataatgtactggaacatcaaacagacacgttgacacagtaaaaaattgaaggaaaaaatgaatt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28524938 aatgtataatggaaaagttgttattttgccccattaataatgtactggaacatcaaacagacacgttgacacagtaaaaaattgaagaaaaaaatgaatt 28525037  T
Q  259 agttgaatgtaatcacatgtgtcagtgtcacattgatgtcggacaacgacatgt 312  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28525038 aattgaatgtaatcacatgtgtcagtgtcacatttatgtcggacaacgacatgt 28525091  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 28524780 - 28524864
Alignment:
Q  1 aaaaatgtagataaattattgcataaactttccaatttcattttcattatgcctttttatttctcgatgcaaaacttagataccc 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28524780 aaaaatgtagataaattattgcataaactttccaatttcattttcattatgcctttttatttctcgatgcaaaacttagataccc 28524864  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 4991186 - 4991146
Alignment:
Q  248 aaaaatgaattagttgaatgtaatcacatgtgtcagtgtca 288  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  4991186 aaaaatgaattaattgaatgtaatcacatgtgtcattgtca 4991146  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 38957382 - 38957343
Alignment:
Q  248 aaaaatgaattagttgaatgtaatcacatgtgtcagtgtc 287  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  38957382 aaaaataaattaattgaatgtaatcacatgtgtcagtgtc 38957343  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 23948409 - 23948450
Alignment:
Q  246 gaaaaaatgaattagttgaatgtaatcacatgtgtcagtgtc 287  Q
    |||||||| ||||| ||||||||||||| |||||||||||||    
T  23948409 gaaaaaatcaattaattgaatgtaatcatatgtgtcagtgtc 23948450  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 44287865 - 44287906
Alignment:
Q  246 gaaaaaatgaattagttgaatgtaatcacatgtgtcagtgtc 287  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  44287865 gaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 44287906  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 54779171 - 54779210
Alignment:
Q  249 aaaatgaattagttgaatgtaatcacatgtgtcagtgtca 288  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  54779171 aaaatgaattatttgaacgtaatcacatgtgtcagtgtca 54779210  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 36768882 - 36768850
Alignment:
Q  255 aattagttgaatgtaatcacatgtgtcagtgtc 287  Q
    ||||| |||||||||||||||||||||||||||    
T  36768882 aattaattgaatgtaatcacatgtgtcagtgtc 36768850  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 20154117 - 20154076
Alignment:
Q  246 gaaaaaatgaattagttgaatgtaatcacatgtgtcagtgtc 287  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  20154117 gaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 20154076  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 20203353 - 20203394
Alignment:
Q  246 gaaaaaatgaattagttgaatgtaatcacatgtgtcagtgtc 287  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  20203353 gaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 20203394  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 34879506 - 34879469
Alignment:
Q  248 aaaaatgaattagttgaatgtaatcacatgtgtcagtg 285  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  34879506 aaaaatcaattaattgaatgtaatcacatgtgtcagtg 34879469  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 585761 - 585725
Alignment:
Q  247 aaaaaatgaattagttgaatgtaatcacatgtgtcag 283  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  585761 aaaaaatgaattaattgaacgtaatcacatgtgtcag 585725  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 32577503 - 32577471
Alignment:
Q  249 aaaatgaattagttgaatgtaatcacatgtgtc 281  Q
    ||||||||||| |||||||||||||||||||||    
T  32577503 aaaatgaattaattgaatgtaatcacatgtgtc 32577471  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 35198270 - 35198210
Alignment:
Q  249 aaaatgaattagttgaatgtaatcacatgtgtcagtgtcacattgatgtcggacaacgaca 309  Q
    ||||||||||| ||||||||||||||||||| | |||||   ||| ||||||||| |||||    
T  35198270 aaaatgaattaattgaatgtaatcacatgtgacggtgtcgtgttgttgtcggacaccgaca 35198210  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 2252469 - 2252508
Alignment:
Q  247 aaaaaatgaattagttgaatgtaatcacatgtgtcagtgtc 287  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  2252469 aaaaaatgaattaattgaat-taatcacatgtgtcagtgtc 2252508  T

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