View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1683-Insertion-1 (Length: 306)
Name: NF1683-Insertion-1
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1683-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 3812015 - 3811905
Alignment:
| Q |
8 |
tatatgacataatcaaaataactacccatggatgttgggtattcacctttgcattttctgatttcattacaccactaaatcccaaataagttcatgtcag |
107 |
Q |
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| T |
3812015 |
tatatgacataatcaaaataactacccatggatgttgggtactcacctttgcattttctgatttcattacaccactaaatcccaaataagttcatgtcag |
3811916 |
T |
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| Q |
108 |
ctccataatca |
118 |
Q |
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||||||||||| |
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| T |
3811915 |
ctccataatca |
3811905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 3811584 - 3811484
Alignment:
| Q |
206 |
tgggcatccataatcaactctggaatcatttataaccaacttaaaatctcgttttaacttatttcggaaaagtccatgtcaaactcgtaagccattttca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3811584 |
tgggcatccataatcaactctggaatcatttataaccaacttaaaatctcgttttagcttatttcgaaaaagtccatgtcaaactcgtaagccattttca |
3811485 |
T |
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| Q |
306 |
g |
306 |
Q |
| |
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| T |
3811484 |
g |
3811484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 24627558 - 24627694
Alignment:
| Q |
160 |
tctaacttttacgtcttgaattcaaccaaactcttgatcaatcatgtgggcatccataatcaactctggaatcatttataaccaacttaaaatctcgttt |
259 |
Q |
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||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||| |
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| T |
24627558 |
tctaacttttacgtcctgatttcaaccaaactcttgctcaaccatgtgggcatccataatcaatcctggaatcatttataaccatcttaaattcacgttt |
24627657 |
T |
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| Q |
260 |
taacttatttcggaaaagtccatgtcaaactcgtaag |
296 |
Q |
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| T |
24627658 |
tagcttatcctggaaaaatccatgtcaaacccgtaag |
24627694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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