View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1683-Insertion-4 (Length: 568)
Name: NF1683-Insertion-4
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1683-Insertion-4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 136 - 568
Target Start/End: Original strand, 8168335 - 8168773
Alignment:
| Q |
136 |
tatgaagcacagacacaaacactggacataacactgatactaatacgtagacatctgataatagtttagagaaatgaaagtgaatgaatgtgaccacatg |
235 |
Q |
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| T |
8168335 |
tatgaagcaccgacacaaacgccggacacgactctgacacta-tacgtagacaactgataataatttaaagaaatgaaagtgaatgaatgtgaccacacg |
8168433 |
T |
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| Q |
236 |
tgtcagtgtcgtggtggtattgaacactgacacgtgtcagacactagacatgctttcaatagtgtcagacaccgaacaaaccttctatctg---ttttgg |
332 |
Q |
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| T |
8168434 |
tgtcagtgtcatgccgatattgaacaa------gtgtcggacaccaaacatgc----aatagtgtcggacaccgaacacgctttctatctgaagtgttgg |
8168523 |
T |
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| Q |
333 |
tactacatatctctgtatgactttcattgttattgacaacaataaagcatcacacagcatcaccaacacaaccatgc--------------ttagtttag |
418 |
Q |
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| T |
8168524 |
tgctacatatctttgtatgactttcattgttattgacagcaacaaaacatcacacagcatcaccaacacaaccatgcatggttttcaatgcttagtttag |
8168623 |
T |
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| Q |
419 |
tctttactaattctattttcaccctctactatgatttgaagtccatttttatgcttcaatgaatttgtgtatccttaacaaattaattannnnnnncttc |
518 |
Q |
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| T |
8168624 |
tcttcactaattcaatttttacactttactatggtttgaagtccatttttatgcttcaatgaatttgtgtatccttaacaaattaattgtttttttcttc |
8168723 |
T |
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| Q |
519 |
ttgcagtcaaaagacaaagatggataatgatgtttacaattttggattca |
568 |
Q |
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| T |
8168724 |
ttgcagtccaaagacaaagatggataatgatgtttacaattttggattca |
8168773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 8168240 - 8168334
Alignment:
| Q |
8 |
actataataacttaaatctactttactagaatgacttgcaactggattcttatgtacctttttgggattgaatttttacgattcagttacatttt |
102 |
Q |
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| T |
8168240 |
actataataacttaaatctactttactagaatgacttgcaactggattattatgtacctttttgggattgaatttttacaattcagttacatttt |
8168334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 52738994 - 52738956
Alignment:
| Q |
210 |
tgaaagtgaatgaatgtgaccacatgtgtcagtgtcgtg |
248 |
Q |
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| T |
52738994 |
tgaaagtgattgaatgtaaccacatgtgtcagtgtcgtg |
52738956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 33532987 - 33533059
Alignment:
| Q |
208 |
aatgaaagtgaatgaatgtgaccacatgtgtcagtgtc-gtggtggtattgaacactgacacgtgtcagacac |
279 |
Q |
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| T |
33532987 |
aatgaaagtgattgaatgtaaccgcatgtgtcaatgtcggtgttgatattggacaccgacatgtgtcagacac |
33533059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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