View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1683-Insertion-5 (Length: 501)
Name: NF1683-Insertion-5
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1683-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 40790761 - 40790508
Alignment:
| Q |
8 |
catctatcgatcatgattgattgagatcattatatggtcttcacaaagttgtacacaatttcaagctttcaattcttgtattttatacggatataatttc |
107 |
Q |
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| T |
40790761 |
catctatctatcatgattgattgagatcattatatggtcttcacaaagttgtacacaatttcaagctttcaattcttgtattttatacggatataatttc |
40790662 |
T |
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| Q |
108 |
ttataagtcacagaaattggaattgatcttctttttcacttgctcatgagatttattatctcttttttaaaatctagtatttttgtctcttgttgaaatc |
207 |
Q |
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| T |
40790661 |
ttataagtcacagaaattggaattgatcttctttttcacttgctcatgaaatttattatctcttttttaaaatctagtatttttgtctcttgttgaaatc |
40790562 |
T |
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| Q |
208 |
tttgttatgaaagtgatatgtcaagttatttattgacatgacataaaacctgtt |
261 |
Q |
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| T |
40790561 |
tttgttatgaaagtgatatgtcaagttatttattgacatgacataaaacctgtt |
40790508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 355 - 501
Target Start/End: Complemental strand, 40787412 - 40787276
Alignment:
| Q |
355 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaacttcacatgatttgaattatgaggcataactaaaagacaattatagaaa |
454 |
Q |
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| T |
40787412 |
gaagtaatgagaatcaatattacctcaagatcatgcgaaaatttatttaaacttcacatgatttgaattatgaggcataactaaa----------tgaaa |
40787323 |
T |
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| Q |
455 |
attgtatgatgagagccataagtattatatgatataggttggattca |
501 |
Q |
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| T |
40787322 |
attgtatgatgagagccataagtattatatgatataggttggattca |
40787276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 355 - 501
Target Start/End: Complemental strand, 15007803 - 15007654
Alignment:
| Q |
355 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaact---tcacatgatttgaattatgaggcataactaaaagacaattatag |
451 |
Q |
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| T |
15007803 |
gaagtaatgtgaatcaatattaccttaagttcatgcgaaaatttatttgaactaattcacatgatttgaattatgaggcctaactaaaagacaattatag |
15007704 |
T |
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| Q |
452 |
aaaattgtatgatgagagccataagtattatatgatataggttggattca |
501 |
Q |
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| T |
15007703 |
aaaattgtatgatgagagccataagtattatatgatataggttggattca |
15007654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 52311122 - 52311151
Alignment:
| Q |
355 |
gaagtaacgagaatcaatattacctcaagt |
384 |
Q |
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| T |
52311122 |
gaagtaacgagaatcaatattacctcaagt |
52311151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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