View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1683-Insertion-6 (Length: 350)
Name: NF1683-Insertion-6
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1683-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 113 - 282
Target Start/End: Original strand, 5115757 - 5115925
Alignment:
| Q |
113 |
tttaaactccaagtaattattacaatttaatacataagacattattaagttgactcaattttcaagtagaaagataaataggtcatagagtattggtgtt |
212 |
Q |
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| T |
5115757 |
tttaaactcaaagtaattattacaatttaatacataag-cattattaagttgactcaattttcaagtagaaagataaataggtcatagaggattggtgtt |
5115855 |
T |
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| Q |
213 |
tcaagcccaataagaggaacaagacatatcattttcttgataatgatggccctacaatatcatcaattca |
282 |
Q |
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| T |
5115856 |
tcaagcccaataacaggaacaagacatatcattttcttgacaatgatggccctacaatatcatcaattca |
5115925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 5111927 - 5112015
Alignment:
| Q |
7 |
aatataatgatctttaccatgagttgatcatccatcaaagggtcaaagcaaaaaccccacaatcagtaataatacatttaaatttatca |
95 |
Q |
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| T |
5111927 |
aatataatgatctttaccataagttgaacatccatcaaagggtcaaagcaaaaaccccaaaatcagtaataatacatttaaatttatca |
5112015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 5115681 - 5115762
Alignment:
| Q |
7 |
aatataatgatctttaccatgagttgatcatccatcaaagggtcaaagcaaaaaccccacaatcagtaataatacatttaaa |
88 |
Q |
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| T |
5115681 |
aatataatgatctttaccataagttcaacatccatcaaagggtcaaagcaaaaaccccacaatcagtaataatacatttaaa |
5115762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 9521087 - 9520999
Alignment:
| Q |
73 |
taataatacatttaaatttatcaacacaaccaac-aacatgtttaaactccaagtaattattacaatttaatacataagacattattaa |
160 |
Q |
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| T |
9521087 |
taataatacattcaaatttgttaaaacaacctagtaacatgtttaaacacaaagtaaatattacaacttaatacataagcaattattaa |
9520999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 40804337 - 40804391
Alignment:
| Q |
204 |
attggtgtttcaagcccaataagaggaacaagacatatcattttcttgataatga |
258 |
Q |
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| T |
40804337 |
attggtgtttcaagcctaataaagggaacaatacatatcaatttcttgacaatga |
40804391 |
T |
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