View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1683-Insertion-7 (Length: 562)
Name: NF1683-Insertion-7
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1683-Insertion-7 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 323 - 562
Target Start/End: Original strand, 18599344 - 18599583
Alignment:
| Q |
323 |
tattttcacacaatgtatcctctacaaatacatgaataacttacacaaaactttatggatttagctaagctcaaaccaatatctcacaagaaattttatc |
422 |
Q |
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| T |
18599344 |
tattttcacacaatgtatcctcgacaaatacgtgaataacttacacaaaacttcatggatttggctaagctcaaactaatatctcacaagaaattttatc |
18599443 |
T |
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| Q |
423 |
tttgttttcttcttcatccattgtatcacaaagtactctcccttttgtctcaggtaagaacactccaaatactccactaaaaccaatagccaacccaaaa |
522 |
Q |
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| T |
18599444 |
tttgttttcttcttcatccattgtatcacaaagtactctcccttttgtctcaggtaagaacactccaaatactccactaaaaccaatagccaacccaaaa |
18599543 |
T |
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| Q |
523 |
accccataacaaagaaacttatttcctctaccagcaccca |
562 |
Q |
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| T |
18599544 |
accccataacaaagaaacttatttcctctaccagcaccca |
18599583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 18598023 - 18598178
Alignment:
| Q |
7 |
acttatatggtctcgtactgaaacagaaaggcaataaaacttcggcacgtacagttcttatggaatctgtaaatagctacccttggaactggaatgcctg |
106 |
Q |
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| T |
18598023 |
acttatatggtctcgtactgaaacagaaaagcaataaaacttcggcacgtacagttcttgtggaatctgtaaatagctacccttggaactggaatgcctg |
18598122 |
T |
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| Q |
107 |
gactgagctgcaatccttatgcacatcggttgatatcttaaatactcttaatctcc |
162 |
Q |
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| T |
18598123 |
gactgagctgcaatccttatgcacttccgttgatatcttaaatactcttaatctcc |
18598178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 7530222 - 7530068
Alignment:
| Q |
7 |
acttatatggtctcgtactgaaacagaaaggcaataaaacttcggcacgtacagttcttatggaatctgtaaatagctacccttggaactggaatgcctg |
106 |
Q |
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| T |
7530222 |
acttatatggtctcatactgaaacagaaaggcaatgatactttggcacgcacagttcttgtggaatctgtaaatagctacccttggaactggaatgcatg |
7530123 |
T |
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| Q |
107 |
gactgagctgcaatccttatgcacatcggttgatatcttaaatactcttaatctc |
161 |
Q |
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| T |
7530122 |
gactgagctacaatccttatgcactacagttgatagcttgaatagtcttaatctc |
7530068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 18599256 - 18599345
Alignment:
| Q |
202 |
aaatagagtgcttaattacacatatgagccaaatttttaatgaagttattctaacacacattattgaacttttaattgactgtacctaaata |
293 |
Q |
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| T |
18599256 |
aaatagagtgcttaattacacatatgagccaaatttttaattaagttattcta--acatattattgaacttttaattgactgtacctaaata |
18599345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 18599203 - 18599237
Alignment:
| Q |
157 |
atctccctcttcctttttgatggctcgtcgtttta |
191 |
Q |
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| T |
18599203 |
atctccctcttcctttttgatggctcgtcgtttta |
18599237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 46962421 - 46962270
Alignment:
| Q |
7 |
acttatatggtctcgtactgaaacagaaaggcaataaaacttcggcacgtacagttcttatggaatctgtaaatagctacccttggaactggaatgcctg |
106 |
Q |
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| T |
46962421 |
acttatatggtcttatactgaaacagaaaggcaatgataatttggcgcgtacagttcttgtggaatctgtaaatagctacccttggaactggaatgcctg |
46962322 |
T |
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| Q |
107 |
gactgagctgcaatccttatgcacatcggttgatatcttaaatactcttaat |
158 |
Q |
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| T |
46962321 |
gactgagctacaatccttatccacttcagttgatattttaaatagtcttaat |
46962270 |
T |
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