View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16830_high_6 (Length: 235)

Name: NF16830_high_6
Description: NF16830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16830_high_6
NF16830_high_6
[»] chr5 (3 HSPs)
chr5 (19-235)||(27017022-27017238)
chr5 (19-235)||(38707474-38707690)
chr5 (37-192)||(20973215-20973370)
[»] scaffold0217 (1 HSPs)
scaffold0217 (54-235)||(7854-8035)
[»] chr7 (3 HSPs)
chr7 (25-235)||(8606462-8606672)
chr7 (44-125)||(43108950-43109031)
chr7 (45-125)||(4164052-4164132)
[»] chr1 (4 HSPs)
chr1 (19-210)||(22559806-22559997)
chr1 (40-161)||(6633015-6633136)
chr1 (46-125)||(17030666-17030745)
chr1 (103-192)||(50092660-50092749)
[»] chr4 (5 HSPs)
chr4 (40-235)||(21479556-21479751)
chr4 (46-119)||(10009238-10009311)
chr4 (46-122)||(42675351-42675427)
chr4 (46-125)||(19309635-19309714)
chr4 (46-122)||(19837151-19837227)
[»] chr8 (2 HSPs)
chr8 (40-126)||(12230757-12230843)
chr8 (46-125)||(11139641-11139720)
[»] chr6 (4 HSPs)
chr6 (45-125)||(1308714-1308794)
chr6 (48-125)||(3489908-3489985)
chr6 (46-119)||(17713643-17713716)
chr6 (44-125)||(26711245-26711326)
[»] chr3 (4 HSPs)
chr3 (42-122)||(26376222-26376302)
chr3 (45-193)||(16896622-16896770)
chr3 (45-193)||(30936706-30936854)
chr3 (46-125)||(19652805-19652884)
[»] chr2 (3 HSPs)
chr2 (99-178)||(34359172-34359251)
chr2 (45-193)||(79720-79868)
chr2 (45-125)||(3153285-3153365)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 27017022 - 27017238
Alignment:
Q  19 gatcatgatgatattttggatgcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaagg 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||| |    
T  27017022 gatcatgatgatatcttggatgcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctggcgtctacttcgaaataggtggcctacaaatg 27017121  T
Q  119 ataacttatggcatcgcggagttatttcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaacaacacatttcattatttattgtct 218  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||| ||||||     
T  27017122 ataacttatggcatcgtggagttatttcctttgactctcaactttgtgtttcgggctgtgggcaaaatgaaacaacaacacatttaattattcattgtcc 27017221  T
Q  219 tacttttgtctctcttt 235  Q
    |||||||| ||||||||    
T  27017222 tacttttggctctcttt 27017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 38707690 - 38707474
Alignment:
Q  19 gatcatgatgatattttggatgcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaagg 118  Q
    |||||| |||| || ||||||||||||||||||| |||||||||||||||||| ||||| || |  || |||||  |||  |||||||||||||||||||    
T  38707690 gatcatcatgacatattggatgcggtgtggcacagaagtgttcctttaaaggtttctatatgcgtgtggcgtcttttccgtaataggtggcctacaaagg 38707591  T
Q  119 ataacttatggcatcgcggagttatttcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaacaacacatttcattatttattgtct 218  Q
    | || ||||||  ||| |||| |||| ||||| |||||||||||||||||||||||||||   ||||||| ||| |||||||||| || ||| ||||||     
T  38707590 acaatttatggggtcgtggagctattccccttgactctcaactttgtgtttcaggttgtggagaaaatgatacagcaacacatttaatcattcattgtcc 38707491  T
Q  219 tacttttgtctctcttt 235  Q
    |||||||| ||||||||    
T  38707490 tacttttggctctcttt 38707474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 20973215 - 20973370
Alignment:
Q  37 gatgcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataacttatggcatcgcg 136  Q
    ||||||||||| || |||| |||||| |||||||||||||||||||| || || ||  ||| |||||||||| |||| ||||| ||||||  |  ||| |    
T  20973215 gatgcggtgtgacataaaaatgttccgttaaaggtctctatttgtgcgtggcggctcttccgcaataggtggtctacgaaggacaacttaaagtgtcgtg 20973314  T
Q  137 gagttatttcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaaca 192  Q
    | |||||| | ||| |  | ||| | ||||||||||||||||  ||||||||||||    
T  20973315 gtgttattccgcttgaagcccaattgtgtgtttcaggttgtggccaaaatgaaaca 20973370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 7854 - 8035
Alignment:
Q  54 aagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataacttatggcatcgcggagttatttcccttaac 153  Q
    |||||||||||||||||||||||||||||  || |||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |     
T  7854 aagtgttcctttaaaggtctctatttgtgtgtggcgtctactccgcaataggtggcctgcaaaggataacttatggcgtcgtggagttatttcccttgaa 7953  T
Q  154 tctcaactttgtgtttcaggttgtgagcaaaatgaaacaacaacacatttcattatttattgtcttacttttgtctctcttt 235  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| || ||||||||  |||||||    
T  7954 tctcaactttgtgtttcaggttgtgggcaaaatgaaacaacaacacatttaattattcattatcctacttttggttctcttt 8035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 8606462 - 8606672
Alignment:
Q  25 gatgatattttggatgcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataact 124  Q
    ||||| || |||||||| |||||||| || ||||||||||||||||||||||| ||||  || |  ||| ||| ||||||||||||||||||||| ||||    
T  8606462 gatgacatgttggatgcagtgtggcataatagtgttcctttaaaggtctctatctgtgtgtggcaactattccgcaataggtggcctacaaaggacaact 8606561  T
Q  125 tatggcatcgcggagttatttcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaacaacacatttcattatttattgtcttacttt 224  Q
    | |||| ||| || |||||| ||||  | | |||||| ||||||||||| ||||  |||||||||| | || ||||| | |||||| |||||||||||||    
T  8606562 tgtggcgtcgtggcgttattcccctagattttcaactatgtgtttcagggtgtggtcaaaatgaaatagcatcacatctaattattcattgtcttacttt 8606661  T
Q  225 tgtctctcttt 235  Q
    ||  |||||||    
T  8606662 tgattctcttt 8606672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 43108950 - 43109031
Alignment:
Q  44 tgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    ||||||| || |||| |||| | || ||||||||||| || || ||||| |||| |||||| ||||| ||||||||||||||    
T  43108950 tgtggcataagagtgctcctctgaaagtctctatttgcgcgtggcgtcttctccgcaatagatggccaacaaaggataactt 43109031  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 4164132 - 4164052
Alignment:
Q  45 gtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    |||||| || |||| |||| | || ||||||||||| || || ||||| |||| |||||| ||||| ||||||||||||||    
T  4164132 gtggcataagagtgctcctctgaaagtctctatttgggcgtggcgtcttctccgcaatagatggccaacaaaggataactt 4164052  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 22559806 - 22559997
Alignment:
Q  19 gatcatgatgatattttggatgcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaagg 118  Q
    |||||||||||||| || || | ||||||||| ||||||||| |||||||||||||||| ||||  || |||||  | | ||||| ||||||||||||||    
T  22559806 gatcatgatgatatgttcgacgtggtgtggcataaaagtgtttctttaaaggtctctatatgtgtgtggcgtctttttcgcaataagtggcctacaaagg 22559905  T
Q  119 ataacttatggcatcgcggagttatttcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaacaacacatttcattatt 210  Q
    | |||||||||| ||| ||||||||| || || |||||||||  ||| ||||||| ||||  |||||||||||| || ||||| | ||||||    
T  22559906 acaacttatggcgtcgtggagttattccctttgactctcaacaatgtatttcaggatgtggacaaaatgaaacagcagcacatctaattatt 22559997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 6633136 - 6633015
Alignment:
Q  40 gcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataacttatggcatcgcggag 139  Q
    ||||||||||| |||||| ||||||||||  | ||||| | ||  || |||||| ||| |||||||||||||  ||||||||||||| ||  ||| ||||    
T  6633136 gcggtgtggcataaaagtattcctttaaatatttctatctatgtgtggcgtctattccgcaataggtggccttaaaaggataacttacggggtcgtggag 6633037  T
Q  140 ttatttcccttaactctcaact 161  Q
    ||||| ||||| ||||||||||    
T  6633036 ttattccccttgactctcaact 6633015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 17030745 - 17030666
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    ||||| |||||||||| ||| ||||||||||| ||||| || || |||||||  |||||||||   ||||||||||||||    
T  17030745 tggcataaaagtgttcttttgaaggtctctatatgtgcgtggcgactactccgaaataggtggttgacaaaggataactt 17030666  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 50092749 - 50092660
Alignment:
Q  103 aggtggcctacaaaggataacttatggcatcgcggagttatttcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaaca 192  Q
    ||||||||||||||||| || ||||||  ||| || |||||| || || | |||||| | ||||||||||| ||||  ||||||||||||    
T  50092749 aggtggcctacaaaggacaatttatggtgtcgtggtgttattcccattgattctcaattgtgtgtttcaggatgtggccaaaatgaaaca 50092660  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 21479751 - 21479556
Alignment:
Q  40 gcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataacttatggcatcgcggag 139  Q
    ||||||||||| |||||||||||||| ||||||||||||||||  || |||||| | | |||||||||||| |||||||| |||||| ||| ||| |||     
T  21479751 gcggtgtggcataaaagtgttcctttgaaggtctctatttgtgtgtggcgtctattacgcaataggtggccaacaaaggacaacttaaggcgtcgtggaa 21479652  T
Q  140 ttatttcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaacaacacatttcattatttattgtcttacttttgtctctcttt 235  Q
    |||||||  |  |||||||||| ||||||||||| ||||  |||| |||| |||||   ||||| |||||| |||||| || |||||  |||||||    
T  21479651 ttatttcattggactctcaactgtgtgtttcagggtgtggtcaaattgaatcaacagatcatttaattattcattgtcctatttttggttctcttt 21479556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 10009238 - 10009311
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaagga 119  Q
    |||||||||| |||||||||||| ||||||||||| || || |||||  ||| |||||| ||||| ||||||||    
T  10009238 tggcacaaaaatgttcctttaaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaagga 10009311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 42675427 - 42675351
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataa 122  Q
    |||||||||| ||||||| | ||||| || |||||||| || ||||| || | ||| ||||||||||||||||||||    
T  42675427 tggcacaaaaatgttcctgtgaaggtttcaatttgtgcatggcgtcttcttcgcaacaggtggcctacaaaggataa 42675351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 19309635 - 19309714
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    |||||||| ||||||||||| || |||||||||||||| || |||||  | | |||||| || || ||||||||||||||    
T  19309635 tggcacaagagtgttcctttgaaagtctctatttgtgcatggcgtctctttcgcaatagatgaccaacaaaggataactt 19309714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 19837227 - 19837151
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataa 122  Q
    ||||| || ||||||||||| || || |||||||| || || ||||| |||| |||||| ||||| |||||||||||    
T  19837227 tggcataagagtgttcctttgaaagtttctatttgcgcttggcgtcttctccgcaatagatggccaacaaaggataa 19837151  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 12230843 - 12230757
Alignment:
Q  40 gcggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactta 126  Q
    ||||||||||| |||||||||||||||||| | ||||| ||||  || |||||| ||||||| ||||||||||| ||||||||||||    
T  12230843 gcggtgtggcataaaagtgttcctttaaagatttctatctgtgtgtggcgtctattccacaacaggtggcctacgaaggataactta 12230757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 11139641 - 11139720
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    ||||| |||||||||| ||| ||||||||||||||||  ||  |||| || |  ||||||||| ||||||||||||||||    
T  11139641 tggcataaaagtgttcatttgaaggtctctatttgtgtgtggtgtcttcttcgtaataggtggtctacaaaggataactt 11139720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 1308714 - 1308794
Alignment:
Q  45 gtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    |||||| || |||| |||||| || |||||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||    
T  1308714 gtggcataagagtgctcctttgaaagtctctatttgtgcgtggcgtcttctccacaatagatggccaacaaaggataactt 1308794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 3489908 - 3489985
Alignment:
Q  48 gcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    |||||| |||||||||||||| |||||||||||||| || |||||  | | |||| | ||||| |||||| |||||||    
T  3489908 gcacaagagtgttcctttaaaagtctctatttgtgcatggcgtctctttcgcaatcgatggccaacaaagaataactt 3489985  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 17713643 - 17713716
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaagga 119  Q
    |||||||||| ||| |||||||| ||||||||||| || || |||||  ||| |||||| ||||| ||||||||    
T  17713643 tggcacaaaaatgtccctttaaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaagga 17713716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 26711326 - 26711245
Alignment:
Q  44 tgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    ||||||| || |||| |||||| || ||||||||||| |  || ||||| |||| |||||| ||||| ||||||||||||||    
T  26711326 tgtggcataagagtgctcctttgaaagtctctatttgcgtgtggcgtcttctccgcaatagatggccaacaaaggataactt 26711245  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 26376222 - 26376302
Alignment:
Q  42 ggtgtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataa 122  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| || || ||| | | | |||||||||| |||||||||||    
T  26376222 ggtgtggcataaaagcgttcctttgaaggtctctatttgtgcttggcgactattacgcgataggtggccaacaaaggataa 26376302  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 16896622 - 16896770
Alignment:
Q  45 gtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataacttatggcatcgcggagttatt 144  Q
    |||||| || |||| |||||| || ||||||||||| || || ||||| |||| |||||| ||| | ||||||||||||||   ||  || || ||||||    
T  16896622 gtggcataagagtgctcctttgaaagtctctatttgcgcgtggcgtcttctccgcaatagatggtcaacaaaggataacttggtgcgacgaggtgttatt 16896721  T
Q  145 tcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaa 193  Q
    ||   | | |||||| |||||||| |||||||||  |||||||||||||    
T  16896722 tcttatgattctcaattttgtgttacaggttgtggacaaaatgaaacaa 16896770  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 30936706 - 30936854
Alignment:
Q  45 gtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataacttatggcatcgcggagttatt 144  Q
    |||||| || |||| |||| |||| ||||||||||| |  || ||||| |||| |||||| ||||| ||||||||||||||   ||  || || ||||||    
T  30936706 gtggcataagagtgctcctctaaaagtctctatttgcgtgtggcgtcttctccgcaatagatggccaacaaaggataacttggtgcgacgaggtgttatt 30936805  T
Q  145 tcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaa 193  Q
    ||   | | |||||| |||||||| |||||||||  |||||||||||||    
T  30936806 tcttatgattctcaattttgtgttacaggttgtggacaaaatgaaacaa 30936854  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 19652805 - 19652884
Alignment:
Q  46 tggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    |||||||| | ||| |||||||| ||||||||||| || || |||||  ||| |||||| ||||| ||||||||||||||    
T  19652805 tggcacaagaatgtccctttaaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaaggataactt 19652884  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 34359251 - 34359172
Alignment:
Q  99 caataggtggcctacaaaggataacttatggcatcgcggagttatttcccttaactctcaactttgtgtttcaggttgtg 178  Q
    |||||||||||||||||| ||||||||| | | ||| ||||||||| ||||| |||||||| | ||||||| ||| ||||    
T  34359251 caataggtggcctacaaaagataacttaggacgtcgtggagttattccccttgactctcaattgtgtgttttagggtgtg 34359172  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 79868 - 79720
Alignment:
Q  45 gtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataacttatggcatcgcggagttatt 144  Q
    |||||| || |||| |||||| || ||||||||||| || || ||||| ||||  ||||  ||||||||||||||||||||   ||  || || ||||||    
T  79868 gtggcataagagtgctcctttgaaagtctctatttgcgcgtggcgtcttctccgtaataaatggcctacaaaggataacttggtgcgacgaggtgttatt 79769  T
Q  145 tcccttaactctcaactttgtgtttcaggttgtgagcaaaatgaaacaa 193  Q
    || | | | |||||| | |||||| |||||||||  |||||||||||||    
T  79768 tctcatgattctcaattatgtgttacaggttgtggacaaaatgaaacaa 79720  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 3153285 - 3153365
Alignment:
Q  45 gtggcacaaaagtgttcctttaaaggtctctatttgtgcctgacgtctactccacaataggtggcctacaaaggataactt 125  Q
    |||||| || |||| |||| | || ||||||||||| || || ||||| |||| |||||| ||||| ||||||||||||||    
T  3153285 gtggcataagagtgctcctctgaaagtctctatttgcgcgtggcgtcttctccgcaatagatggccaacaaaggataactt 3153365  T

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