View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16830_low_2 (Length: 484)
Name: NF16830_low_2
Description: NF16830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16830_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 31785273 - 31785746
Alignment:
| Q |
1 |
aatcaccagcaacaagtcttttagcactcacagaaacactccatccagtggtaagtagatgcctgcaagagagtaaaacttcaaagattatacaaaaagt |
100 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31785273 |
aatcgccagcaacaagtattttagcactcacaaaaacactccatccagttgtaagtagatgcctgcaagagagaaaaacttcaaagattatacaaaaagt |
31785372 |
T |
|
| Q |
101 |
aacgacatattttcatccctcaacaagaaacatgttcatcgaactgaaaggaaaactccgaaatttgcaattaaagtgaaattcagctttgtaactcacc |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31785373 |
aacgacgtattttcatccctcaacaagaaacatgttcatgaaactgaaaggaaaactccgacatttgcaattaaaatgaaattcagctttgtaactcacc |
31785472 |
T |
|
| Q |
201 |
tcagaagatatgcttaaa-ttctatttgttaccatgcaaatcccttgctattaacacttgagcaggaggctgttggaagaaatcctgcaggtcaaactta |
299 |
Q |
| |
|
||||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31785473 |
tcagaagatatgcctaaatttctattcggtaccatgcaaatcccttgctattaacacttaaccaggaggctgttggaagaaatcctgcaggtcaaaatta |
31785572 |
T |
|
| Q |
300 |
caaaaacttaagaaactgaaagatttggtagataaatttaagtttggtaattggcagcatgatttttcgacaaatgtttaccgaaggaggaaacactttt |
399 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31785573 |
caaagacttaagaaactgatagatttggtagataaatttaagtttggtaattggtagca----ttttcgacaaatgtttaccgaaggaggaaacactttt |
31785668 |
T |
|
| Q |
400 |
tcagccgcccgacgaggcacaaac----------gagtgcttgtgtcacttgactagcggtcaaggtcttgcaaaagt |
467 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31785669 |
tcagccgcccgacgaggcacaaacaatcccccgtgagtgcttgtgtcacttgactagcagtcaaggtcttgcaaaagt |
31785746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 32801399 - 32800963
Alignment:
| Q |
1 |
aatcaccagcaacaagtcttttagcactcacagaaacactccatccagtggtaagtagatgcct-------------gcaagagagtaaaacttcaaaga |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
32801399 |
aatcaccagcaacaagtcttttagcactcacagaaacactccatccagttgtaagtagatgccttttgggctggccagcaagagagaaaaacttcaaaga |
32801300 |
T |
|
| Q |
88 |
ttatacaaaaagtaacgacatattttcatccctcaacaagaaacatgttcatcgaactgaaaggaaaactccgaaatttgcaattaaagtgaaattcagc |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| |||||| ||||||||||| |
|
|
| T |
32801299 |
ttatacaaaaagtaacgacatattttcatccctcaacaagaaacatgttcatgaaactgaaaggaaaactccaacatttgccattaaaatgaaattcagc |
32801200 |
T |
|
| Q |
188 |
tttgtaactcacctcagaagatatgcttaaatt-ctatttgttaccatgcaaatcccttgctattaacacttgagcaggaggctgttggaagaaatcctg |
286 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32801199 |
tttgtaactcacctcagaagatatgcctaaatttctatttgttaccatgcaaatcccttgctattaacacttgagcaggaggctgttggaagaaatcctg |
32801100 |
T |
|
| Q |
287 |
caggtcaaacttacaaaaacttaagaaactgaaagatttggtagataaatttaagtttggtaattggcagcatgatttttcgacaaatgtttaccgaagg |
386 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32801099 |
caggtcaaaattacaaagacttaagaaactgaaagatttggtagataaatttaagtttggtaattggtagcatgatttttcgacaaatgtttaccgaagg |
32801000 |
T |
|
| Q |
387 |
aggaaacactttttcagccgcccgacgaggcacaaac |
423 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
32800999 |
aggaaacactttttcagccgcccaacgaggaacaaac |
32800963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 5909845 - 5910268
Alignment:
| Q |
1 |
aatcaccagcaacaagtcttttagcactcacagaaacactccatccagtggtaagtagatg-------------cctgcaagagagtaaaacttcaaaga |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| | ||||| ||||| |
|
|
| T |
5909845 |
aatcaccagcaacaagtcttttagcactcacaaaaacactccatccagttgtaagtagatgtcttttgggctggcctgcaagagagaagaacttaaaaga |
5909944 |
T |
|
| Q |
88 |
ttatacaaaaagtaacgacatattttcatccctcaacaagaaacatgttcatcg--aactgaaaggaaaactccgaaatttgcaattaaagtgaaattca |
185 |
Q |
| |
|
||||| |||||| || ||||| || ||| ||||||| ||||||| ||| | || ||||||| | |||| | ||| |||||||| |||||||||||||| |
|
|
| T |
5909945 |
ttata-aaaaagaaaagacattttatcagccctcaataagaaacgtgtacttctcaaactgaatgaaaaatttcgacatttgcaactaaagtgaaattca |
5910043 |
T |
|
| Q |
186 |
gctttgtaactcacctcagaagatatg-cttaaattctatttgttaccatgcaaatcccttgctattaacacttgagcaggaggctgttggaagaaatcc |
284 |
Q |
| |
|
||||||||||| ||||| ||||||||| || || ||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
5910044 |
gctttgtaactgacctcggaagatatgtctgaatttccattcgttaccatgcaagtcccttgctattaactcttgagcaggaggctgttgggagaaatcc |
5910143 |
T |
|
| Q |
285 |
tgcaggtcaaacttacaaaaacttaagaaactgaaagatttggtagataaatttaagtttggtaattggcagcatgatttttcgacaaatgtttaccgaa |
384 |
Q |
| |
|
||||||||| | |||| || |||| ||||||||| | | |||||||||| ||||||||||||| ||||||| ||||| | ||||||||||| || |
|
|
| T |
5910144 |
tgcaggtcacagttacgaagacttgagaaactgatatacttggtagatagatttaagtttggt-------agcatgacttttccaaaaatgtttaccaaa |
5910236 |
T |
|
| Q |
385 |
ggaggaaacactttttcagccgcccgacgagg |
416 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
5910237 |
ggaggaaacactttttcagccgcccggcgagg |
5910268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34082070 - 34082133
Alignment:
| Q |
1 |
aatcaccagcaacaagtcttttagcactcacagaaacactccatccagtggtaagtagatgcct |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||| || || ||||| | |||||| |
|
|
| T |
34082070 |
aatcaccagcaacaagtcttttagcactcacaaagacactccaacctgttgtaagcaaatgcct |
34082133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 34082323 - 34082369
Alignment:
| Q |
228 |
ttaccatgcaaatcccttgctattaacacttgagcaggaggctgttg |
274 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||||||||| ||||| |
|
|
| T |
34082323 |
ttaccatgcaaatcccttgcaatcaactcttgagcaggaggttgttg |
34082369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University