View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16830_low_3 (Length: 403)
Name: NF16830_low_3
Description: NF16830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16830_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 1947907 - 1948283
Alignment:
| Q |
11 |
caaagggttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttc |
110 |
Q |
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| T |
1947907 |
caaagggttagaggatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttc |
1948006 |
T |
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| Q |
111 |
aaatttatgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgat |
210 |
Q |
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| T |
1948007 |
aaatttatgcaatgcaagaaggtgcaacaaaaagggtagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgat |
1948106 |
T |
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| Q |
211 |
gttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatg |
310 |
Q |
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| T |
1948107 |
gttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatg |
1948206 |
T |
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| Q |
311 |
ttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagt |
387 |
Q |
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| T |
1948207 |
ttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagcattaaagt |
1948283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 1978499 - 1978123
Alignment:
| Q |
11 |
caaagggttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttc |
110 |
Q |
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| T |
1978499 |
caaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttactcgagttacttc |
1978400 |
T |
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| Q |
111 |
aaatttatgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgat |
210 |
Q |
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| T |
1978399 |
aaatttatgcaatgcaagaaggtgaaccaaagagggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaat |
1978300 |
T |
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| Q |
211 |
gttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatg |
310 |
Q |
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| T |
1978299 |
gttgaaagacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatg |
1978200 |
T |
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| Q |
311 |
ttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagt |
387 |
Q |
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| T |
1978199 |
ttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaaaagtttccaagcattaaagt |
1978123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 1985407 - 1985054
Alignment:
| Q |
18 |
ttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaattta |
117 |
Q |
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|||||| ||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||| |||||||||| |||||| |||| |
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| T |
1985407 |
ttagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcctacttgagttccttcaatttta |
1985308 |
T |
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| Q |
118 |
tgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgaga |
217 |
Q |
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| T |
1985307 |
tgccatgcaagaa---gaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgcaattttgagg |
1985211 |
T |
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| Q |
218 |
gacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattc---tcgtcaaaagaagctgctgatgaaatgttga |
314 |
Q |
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|| ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| || ||| ||||| ||||||||| |||||| |
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| T |
1985210 |
gatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaaaatgctgatgatgtgttga |
1985111 |
T |
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| Q |
315 |
ttttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagt |
371 |
Q |
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| T |
1985110 |
tattgatgtgtataaggttgtttaaagagatttcaccctttaagatgtttgaagagt |
1985054 |
T |
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