View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16830_low_4 (Length: 331)
Name: NF16830_low_4
Description: NF16830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16830_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 41417712 - 41418017
Alignment:
| Q |
9 |
gaaaagaaacaacccaccctcaataattaaaaaaggacacaagcaaggaaatta-cattcacataaaa-agaaagaaagaaatcatcgaggaattcaata |
106 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
41417712 |
gaaaagaaacaatccaccctcaataattaaaaaaggacacaagaaaggaaattaacattcacataaaataaaaagaaagaaatcatcgaggaattcaata |
41417811 |
T |
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| Q |
107 |
atacacaatttcaaatttcatttcccatctagtagtcagtagttgggagctgctcgtgggtgctgttgatgaagagaacctcatagacaagtccagcaat |
206 |
Q |
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| T |
41417812 |
atacagaatttcaaatttcatttcccatctagtagtcagtagttgggagctgctcgtgggtgctgttgatgaagagaacctcatagacaagtccagcaat |
41417911 |
T |
|
| Q |
207 |
tccaccaccgataagtgggccagcccagtagacccagtggttggaccagctccagctcacaacagcaggcccgaatgacactgctgggttcatggatgct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41417912 |
tccaccaccgataagtgggccagcccagtagacccagtggttggaccagctccagctcacaacagcaggcccgaatgacactgctgggttcatggatgct |
41418011 |
T |
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| Q |
307 |
ccggtg |
312 |
Q |
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|||||| |
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| T |
41418012 |
ccggtg |
41418017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 7656855 - 7656815
Alignment:
| Q |
265 |
acaacagcaggcccgaatgacactgctgggttcatggatgc |
305 |
Q |
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| T |
7656855 |
acaacagcaggcccaaatgacacagctggattcatggatgc |
7656815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 23340471 - 23340423
Alignment:
| Q |
257 |
tccagctcacaacagcaggcccgaatgacactgctgggttcatggatgc |
305 |
Q |
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| T |
23340471 |
tccagctaacaacagcaggcccaaaagaaactgctgggttcatggatgc |
23340423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 52102271 - 52102311
Alignment:
| Q |
265 |
acaacagcaggcccgaatgacactgctgggttcatggatgc |
305 |
Q |
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||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
52102271 |
acaacagcaggcccgaaagacacagctgggttcattgatgc |
52102311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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