View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16830_low_5 (Length: 292)
Name: NF16830_low_5
Description: NF16830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16830_low_5 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 29444205 - 29443928
Alignment:
| Q |
15 |
aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444205 |
aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg |
29444106 |
T |
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| Q |
115 |
tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggn |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444105 |
tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacgga |
29444006 |
T |
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| Q |
215 |
nnnnnntaccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444005 |
aaaaaataccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtct |
29443928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 29454209 - 29454043
Alignment:
| Q |
18 |
atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29454209 |
atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacacaacaatgttc |
29454110 |
T |
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| Q |
118 |
ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca |
184 |
Q |
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| T |
29454109 |
ttatccttaaatacatagataccacaacagggtggaatagactcaacattccgaaataagtttgaca |
29454043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 29422520 - 29422680
Alignment:
| Q |
18 |
atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
29422520 |
atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacccaacaatgttc |
29422619 |
T |
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| Q |
118 |
ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca |
184 |
Q |
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| T |
29422620 |
ttatcc------acatagataccacgacagggttgaatagtctcaacattccgaaataagtttgaca |
29422680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 29468637 - 29468412
Alignment:
| Q |
50 |
ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatccttaaatacatagatacaacgacaagg |
149 |
Q |
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| T |
29468637 |
ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc------acatagatgccatgacaggg |
29468544 |
T |
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| Q |
150 |
ttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggnnnnnnntaccaactcatacaaatattatttattta |
249 |
Q |
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| T |
29468543 |
tcg---------aacatttcaaaataagtttgacatcgtagtgagga-tctcaaccaatgaaggaaaaaaagaccaactcataccaatattatatactca |
29468454 |
T |
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| Q |
250 |
gcctacttttaaagtaaaggaatcctgcaaattccttttgtct |
292 |
Q |
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| T |
29468453 |
acctacatttaaagtaaaggaatcctgcaaa-tccttttgtct |
29468412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 29453990 - 29453922
Alignment:
| Q |
222 |
accaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtct |
292 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||| |
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| T |
29453990 |
accaactcataccaatattatttatttaacctacttttaaattaaa-gaatcctgcaaa-tccttttgtct |
29453922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 29473751 - 29473678
Alignment:
| Q |
50 |
ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatcc |
123 |
Q |
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|||||||| || |||||||||||||| || ||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
29473751 |
ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc |
29473678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 29422730 - 29422789
Alignment:
| Q |
222 |
accaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaat |
281 |
Q |
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|||||||||||| ||||||||||| ||| | ||||| ||||| ||||||||||||||||| |
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| T |
29422730 |
accaactcataccaatattatttaattaacatacttctaaagcaaaggaatcctgcaaat |
29422789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 12019750 - 12019598
Alignment:
| Q |
15 |
aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat |
113 |
Q |
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||||||||||| |||||||||| || || |||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
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| T |
12019750 |
aatatcacaaatgaatagtgataaataatataaatattttgaaaggaattatacatagatttggagtaa-ttcattgcaggtaaatttctacacaacaat |
12019652 |
T |
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| Q |
114 |
gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatt |
167 |
Q |
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| T |
12019651 |
attcttatccttaaatacacagataccacaacagggtggaatagtctcaacatt |
12019598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 12007104 - 12006934
Alignment:
| Q |
15 |
aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat |
113 |
Q |
| |
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||||||||| | |||||||||| || || |||||||||||||||||| ||||||||||| || |||||| |||||| ||| ||||||||||| |||||| |
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| T |
12007104 |
aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacatagagttggagtaatttcattaaaggtaaatttctacagaacaat |
12007005 |
T |
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| Q |
114 |
gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca |
184 |
Q |
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|| ||||||||||||||| |||||| || ||| ||| ||| | ||||||||||| ||||||||||||||| |
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| T |
12007004 |
attcttatccttaaatacacagataccacaacagggtggaataatctcaacattttgaaataagtttgaca |
12006934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 11988229 - 11988111
Alignment:
| Q |
65 |
tacatagattttgagtaaattcattgcaggcaaatttcta-cacaacaatgtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaa |
163 |
Q |
| |
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||||| ||||| |||| | ||||||||| | ||||||||| |||||||| ||| ||||||||| |||| |||||| || ||| ||| ||| |||| ||| |
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| T |
11988229 |
tacattgatttggagttatttcattgcaagaaaatttctaacacaacaacgttcttatcctta--tacacagataccacaacagggtagaatagtcacaa |
11988132 |
T |
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| Q |
164 |
catttcgaaataagtttgaca |
184 |
Q |
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||||||||||||||||||||| |
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| T |
11988131 |
catttcgaaataagtttgaca |
11988111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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