View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16831_low_1 (Length: 755)
Name: NF16831_low_1
Description: NF16831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16831_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 87 - 739
Target Start/End: Complemental strand, 26803718 - 26803066
Alignment:
| Q |
87 |
tacatgtatcggtgttgtgttgtgtcgaacaccaacacatgttagaggcagacatgctttccatcggaagtgtggattctccacaaacacacataaacta |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26803718 |
tacatgtatcggtgttgtgttgtgtcgaacaccaacacatgtaagagacagacatgctttccatcggaagtgtggattctccacaaacacacataaatta |
26803619 |
T |
|
| Q |
187 |
ggtgtatgtttggatgagtttattgaacggatagttcggcaaaatcatggtgacactataatattgttgaaactcaaaattggaacttttatcaatattg |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26803618 |
ggtgtatgtttggatgagtttattgaacggatagtttggaaaaatcatgatgacactataatattgttgaaactcaaaattggaacttttatcaatattg |
26803519 |
T |
|
| Q |
287 |
cggtggtttaccataattttgttaatgtcactgtcaattcaaatatgaactaattgcattatcgatgaagactaacaaatattatgatgttgtctatatt |
386 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
26803518 |
cggtggtttaccataattttgttaatctcactgtcaattcaaatatgaactaattgcattatagatgaagactaaaaaatattatgatgttgtctatatt |
26803419 |
T |
|
| Q |
387 |
caggatgttgtttgaacttctaattttaagtggagctcaagttggatctgattggacctcaaccttgaagaaacgccgagatttcaggtttgattctgat |
486 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26803418 |
caggatgttgtttgaacttctaattttaagtggagctcaagttggatctgattggacctcaaccttgaagaaacgcctagatttcaggtttgattctgat |
26803319 |
T |
|
| Q |
487 |
taaattcattcatatagttaattgcagaacatacaataatatttttgctctagggaagtactaattttaaatttatgtgcagggctgcattttcagaatt |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26803318 |
taaattcattcatatagttaattgcagaacatacaataatatttttgctctagggaagtactaattttaaatttatgtgcagggctgcattttcagaatt |
26803219 |
T |
|
| Q |
587 |
tgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataat |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26803218 |
tgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataat |
26803119 |
T |
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| Q |
687 |
gctaaccaaattttacaggtaaataaaaatgtgcccttttcatcattcttttc |
739 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26803118 |
gctaaccaaattttacaggtaaataaaaatgtgcccttttcatcattcttttc |
26803066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 26803830 - 26803748
Alignment:
| Q |
6 |
tctctctcacacacctatgaaacactaacgttgatataaatattttacactaaacacaacatgacacatcaacaccggtgata |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
26803830 |
tctctctcacacacctatgaaacactaacattgatataaatattttacactaaacacaacatgacacatcgacaccagtgata |
26803748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 512
Target Start/End: Original strand, 25284402 - 25284456
Alignment:
| Q |
458 |
aacgccgagatttcaggtttgattctgattaaattcattcatatagttaattgca |
512 |
Q |
| |
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|||||| ||||||||||||||||| ||| ||||||||||||||| |||| |||| |
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| T |
25284402 |
aacgcctagatttcaggtttgattatgagaaaattcattcatatacttaagtgca |
25284456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 465 - 692
Target Start/End: Complemental strand, 30343583 - 30343352
Alignment:
| Q |
465 |
agatttcaggtttgattctgattaaattcattcatatagttaattgcaga---acatacaataatatttttgctctagggaagta-ctaattttaaattt |
560 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |||||||| | ||||| | || | ||||||||||||||||||| |||| ||||||||| |
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| T |
30343583 |
agatttcaggtttgattatgagaaaattcattcatatacctaattgcatatgcacataaattattttttttgctctagggaagtaactaactttaaattt |
30343484 |
T |
|
| Q |
561 |
atgtgcagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataa |
660 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
30343483 |
atgtgcagagatgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatagcattgacataa |
30343384 |
T |
|
| Q |
661 |
gtaaagttagaggagttgttgataatgctaac |
692 |
Q |
| |
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| |||||||||||||||||||||||||||||| |
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| T |
30343383 |
gaaaagttagaggagttgttgataatgctaac |
30343352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 18416893 - 18416797
Alignment:
| Q |
387 |
caggatgttgtttgaacttctaattttaagtggagctcaagttggatctgattggacctcaaccttgaagaaacgccgagatttcaggtttgattct |
483 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||| |
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| T |
18416893 |
caggatgttgtttgaacttctagttttaagtggtgctcaagttggatctgattggacctcaatcttgaagaaacgtcaagatttcaggttggattct |
18416797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 566 - 709
Target Start/End: Complemental strand, 18416520 - 18416377
Alignment:
| Q |
566 |
cagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataagtaaa |
665 |
Q |
| |
|
|||| ||||||||||||||||| |||||| || ||||||| || |||||||| |||||| |||||||||||| |||||||| ||||||||||| | | |
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| T |
18416520 |
caggactgcattttcagaatttcatgcagcaacattggccaacttaactgataaacaaatgttgtctattagtttggaatatgggattgatataagcaga |
18416421 |
T |
|
| Q |
666 |
gttagaggagttgttgataatgctaaccaaattttacaggtaaa |
709 |
Q |
| |
|
||| |||||||||||||||||||||| | ||||||| ||||||| |
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| T |
18416420 |
gttcgaggagttgttgataatgctaatcgaattttagaggtaaa |
18416377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 465 - 692
Target Start/End: Original strand, 18986196 - 18986427
Alignment:
| Q |
465 |
agatttcaggtttgattctgattaaattcattcatatagttaattgcaga---acatacaataatatttttgctctagggaagta-ctaattttaaattt |
560 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |||||||| | ||||| | || | || |||||||||| ||||| |||| ||||||||| |
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|
| T |
18986196 |
agatttcaggtttgattatgagaaaattcattcatatacctaattgcatatgcacataaattatttttgttgctctaggtaagtaactaactttaaattt |
18986295 |
T |
|
| Q |
561 |
atgtgcagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataa |
660 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
18986296 |
atgtgcagagctgcattttcagaatttgatgcagaaattgtggccaatttgattgataagcaaatgatgtctattagttcagaatatagcattgacataa |
18986395 |
T |
|
| Q |
661 |
gtaaagttagaggagttgttgataatgctaac |
692 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
18986396 |
gaaaagttagaggagttgttgataatgctaac |
18986427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 465 - 692
Target Start/End: Complemental strand, 23919321 - 23919090
Alignment:
| Q |
465 |
agatttcaggtttgattctgattaaattcattcatatagttaattgcaga---acatacaataatatttttgctctagggaagta-ctaattttaaattt |
560 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |||||||| | ||||| | || | || |||||||||| ||||| |||| ||||||||| |
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|
| T |
23919321 |
agatttcaggtttgattatgagaaaattcattcatatacctaattgcatatgcacataaattatttttgttgctctaggtaagtaactaactttaaattt |
23919222 |
T |
|
| Q |
561 |
atgtgcagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataa |
660 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
23919221 |
atgtgcagagctgcattttcagaatttgatgcagaaattgtggccaatttgattgataagcaaatgatgtctattagttcagaatatagcattgacataa |
23919122 |
T |
|
| Q |
661 |
gtaaagttagaggagttgttgataatgctaac |
692 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
23919121 |
gaaaagttagaggagttgttgataatgctaac |
23919090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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