View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16831_low_4 (Length: 434)
Name: NF16831_low_4
Description: NF16831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16831_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 20460458 - 20460861
Alignment:
| Q |
20 |
cagttccaatggcaacatgctcaaagacaacctcatatggatcatcttctgtaagaatgagacgccgtccattcttatcgtcatacctcccaatatcatg |
119 |
Q |
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| T |
20460458 |
cagttccaatggcaacatgctcaaagacaacctcatatggatcatcttctgtaagaatgagacgccgtccattcttatcatcatacctcccaatatcatg |
20460557 |
T |
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| Q |
120 |
acaaagacctggtggagcagtgaatgtaggacaaaacacaagtttgtatccaaaaccatgtttcacgattttaaacttaccatctatgatatgcttacct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20460558 |
acaaagacctggtggagcagtgaatgtaggacaaaacacaagtttgtatccaaaaccatgtttcacgattttaaacttaccatctatgatatgcttacct |
20460657 |
T |
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| Q |
220 |
atatagtcttcaataccaccaataccaacccatggtctagggaaatcatcttcaatcagcaaccacttcgaggattcggcacactctggcttttctggaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20460658 |
atatagtcttcaataccaccaataccaacccatggtctagggaaatcatcttcaatcagcaaccacttcgaggattcggcacactctggcttttctggaa |
20460757 |
T |
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| Q |
320 |
atacaatatccactcttgacgtgtctgtagatatcaaatcaataaaaacttcagcgtcagtgctaaattttaccgggagaccgttgacgacctcagaata |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20460758 |
atacaatatccactcttgacgtgtctgtagatatcaaatcaataaaaatttcagcgtcagtgctaaattttaccgggagaccgttgacgacctcagaata |
20460857 |
T |
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| Q |
420 |
atct |
423 |
Q |
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|||| |
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| T |
20460858 |
atct |
20460861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 24221958 - 24222114
Alignment:
| Q |
100 |
tcatacctcccaatatcatgacaaagacctggtggagcagtga-atgtaggacaaaacacaagtttgtatccaaaaccatgtttcacgattttaaactta |
198 |
Q |
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|||| |||||||||||||| |||| ||| ||||| ||||||| || | ||||| |||||||| ||||||||||||||||||||| |||||||| | |
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| T |
24221958 |
tcatgcctcccaatatcataacaagcaccaggtggggcagtgatatct-ggacagaacacaagcttgtatccaaaaccatgtttctgaattttaaagaaa |
24222056 |
T |
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| Q |
199 |
ccatctatgatatgcttacctatatagtcttcaataccaccaataccaacccatggtc |
256 |
Q |
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|||| |||||||||||||||| || |||||| |||||||||||||||||||||||| |
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| T |
24222057 |
ccatttatgatatgcttaccttcattatcttcagtaccaccaataccaacccatggtc |
24222114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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