View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16831_low_5 (Length: 411)

Name: NF16831_low_5
Description: NF16831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16831_low_5
NF16831_low_5
[»] chr4 (16 HSPs)
chr4 (209-393)||(50551482-50551668)
chr4 (209-275)||(54316059-54316125)
chr4 (209-276)||(7061976-7062043)
chr4 (215-270)||(24673957-24674012)
chr4 (209-270)||(17914978-17915039)
chr4 (209-276)||(9551455-9551522)
chr4 (213-275)||(3556371-3556433)
chr4 (209-270)||(50544266-50544327)
chr4 (209-265)||(21785928-21785984)
chr4 (209-276)||(5465857-5465924)
chr4 (209-251)||(5466079-5466121)
chr4 (209-251)||(4402063-4402106)
chr4 (209-276)||(11789863-11789930)
chr4 (209-276)||(23655298-23655365)
chr4 (209-267)||(42475889-42475947)
chr4 (223-276)||(35256146-35256199)
[»] chr8 (12 HSPs)
chr8 (209-276)||(43801474-43801541)
chr8 (209-270)||(6911039-6911100)
chr8 (209-276)||(15009088-15009155)
chr8 (209-270)||(14999181-14999242)
chr8 (212-276)||(16324848-16324912)
chr8 (209-276)||(43801701-43801768)
chr8 (209-270)||(8489383-8489444)
chr8 (213-270)||(16325080-16325137)
chr8 (209-252)||(6911259-6911302)
chr8 (213-264)||(41722061-41722112)
chr8 (209-263)||(22781072-22781126)
chr8 (212-270)||(41403993-41404051)
[»] chr7 (12 HSPs)
chr7 (209-270)||(35207405-35207466)
chr7 (212-270)||(19318157-19318215)
chr7 (209-266)||(35207192-35207249)
chr7 (213-269)||(29474646-29474702)
chr7 (212-270)||(39983870-39983928)
chr7 (212-276)||(19318452-19318516)
chr7 (212-276)||(25048257-25048321)
chr7 (209-275)||(6408484-6408551)
chr7 (209-276)||(19318378-19318445)
chr7 (209-276)||(35363322-35363389)
chr7 (209-276)||(3740647-3740714)
chr7 (209-270)||(2834429-2834490)
[»] chr5 (8 HSPs)
chr5 (209-276)||(17370071-17370138)
chr5 (209-270)||(14076899-14076960)
chr5 (209-276)||(31193969-31194036)
chr5 (209-276)||(31194195-31194262)
chr5 (209-276)||(8754662-8754729)
chr5 (209-268)||(36955524-36955583)
chr5 (212-270)||(32347130-32347188)
chr5 (212-268)||(36955315-36955371)
[»] chr2 (14 HSPs)
chr2 (209-276)||(4371458-4371525)
chr2 (209-276)||(22563214-22563281)
chr2 (209-276)||(22563440-22563507)
chr2 (209-270)||(12232573-12232634)
chr2 (212-276)||(29893030-29893094)
chr2 (209-276)||(17200082-17200149)
chr2 (209-270)||(21265573-21265634)
chr2 (209-266)||(34645776-34645833)
chr2 (209-276)||(34645551-34645618)
chr2 (209-266)||(17200308-17200364)
chr2 (209-270)||(20296646-20296707)
chr2 (209-270)||(21265792-21265853)
chr2 (209-270)||(20296272-20296333)
chr2 (211-247)||(4682789-4682825)
[»] chr3 (11 HSPs)
chr3 (211-276)||(38500053-38500118)
chr3 (209-276)||(4041413-4041480)
chr3 (209-276)||(8799321-8799388)
chr3 (209-276)||(38499823-38499890)
chr3 (209-275)||(53197213-53197279)
chr3 (209-270)||(43797362-43797423)
chr3 (212-270)||(43797585-43797643)
chr3 (209-243)||(46883452-46883486)
chr3 (209-247)||(46883642-46883680)
chr3 (209-270)||(29828911-29828972)
chr3 (209-249)||(43797871-43797911)
[»] chr1 (16 HSPs)
chr1 (209-276)||(24882975-24883042)
chr1 (209-276)||(33400859-33400926)
chr1 (211-276)||(3385543-3385608)
chr1 (209-270)||(33156684-33156745)
chr1 (209-276)||(24883198-24883265)
chr1 (209-276)||(27171803-27171870)
chr1 (212-279)||(49777056-49777123)
chr1 (215-276)||(33156460-33156520)
chr1 (211-276)||(49776823-49776888)
chr1 (209-276)||(3385312-3385379)
chr1 (209-270)||(5771918-5771979)
chr1 (211-276)||(34969989-34970054)
chr1 (209-276)||(34622555-34622622)
chr1 (209-242)||(13946960-13946993)
chr1 (209-270)||(33401086-33401147)
chr1 (211-247)||(13947154-13947190)
[»] chr6 (3 HSPs)
chr6 (209-276)||(16125526-16125593)
chr6 (209-276)||(22748592-22748659)
chr6 (211-270)||(22748820-22748879)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 209 - 393
Target Start/End: Original strand, 50551482 - 50551668
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccgactccaatacgccaacccaaaaatagtcatagc 308  Q
    |||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  50551482 tgccacatatcttacatccaaaccttaaatggagtaaataaagtttagcctaaatggagcataccccactccaatgcgccaacccaaaaatagtcatagc 50551581  T
Q  309 tgaacaacaggagaaagaaataaagta--gaatcaaccggagtacaatacgttcaatcacatatggttcctaacccaaccacaccct 393  Q
    |||||||| || |||||||  ||||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50551582 tgaacaactggggaaagaagcaaagtagggaatcaactggagtacaatatgttcaatcacatatggttcctaacccaaccacaccct 50551668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 54316059 - 54316125
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccg 275  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  54316059 tgccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccg 54316125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 7062043 - 7061976
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| |||||||||  |||||||||||||||||| |||||||||||||||||| |||||    
T  7062043 tgccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccga 7061976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 24673957 - 24674012
Alignment:
Q  215 atgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcat 24674012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 17914978 - 17915039
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| |||||||||| |||||||||||||| ||  ||||||||||||||||||    
T  17914978 tgccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcat 17915039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 9551455 - 9551522
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||| ||||||| ||||||| | ||||||||||||||| |||||||| ||||||||||||| |||||    
T  9551455 tgccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccga 9551522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 3556433 - 3556371
Alignment:
Q  213 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccg 275  Q
    ||||||||| |||||||||  ||||||||||||||  |||||||| |||||||||||||||||    
T  3556433 acatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatggagcatgcccg 3556371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 50544327 - 50544266
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| ||||||||| |||||| || ||||| ||| ||||||||||||||||||    
T  50544327 tgccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcat 50544266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 21785928 - 21785984
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgg 265  Q
    ||||||||||  | ||||||||||||||||||||||||| ||| |||||||||||||    
T  21785928 tgccacatgtaatgcatccaaactctaaatggagtaaatggagcttagcctaaatgg 21785984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 5465924 - 5465857
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||||||||||| |||| ||||||| |||||||  |  |||||||||||||||||| |||||    
T  5465924 tgccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccga 5465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 5466079 - 5466121
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagag 251  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  5466079 tgccacatgtcttacatccaaaccctaaatagagtaaatagag 5466121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 4402106 - 4402063
Alignment:
Q  209 tgccacatgtcttacatccaaact-ctaaatggagtaaatagag 251  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  4402106 tgccacatgtcttacatccaaactcctaaatggattaaatagag 4402063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 11789930 - 11789863
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||| |||| |||| |||| |||||||||||||||  || || ||||||||||||||| |||||    
T  11789930 tgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccga 11789863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 23655298 - 23655365
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| |||| |||| ||||||||| |||||  || ||| |||||||||||||| |||||    
T  23655298 tgccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccga 23655365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 42475947 - 42475889
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggag 267  Q
    |||||| |||||| ||||||||| |||||| ||||||||  || |||||||||||||||    
T  42475947 tgccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatggag 42475889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 35256199 - 35256146
Alignment:
Q  223 catccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||||||||||||||||||  || |||| |||||| |||||| |||||    
T  35256199 catccaaactctaaatggagtaaatgcagcttagtctaaatagagcatacccga 35256146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 43801541 - 43801474
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||||    
T  43801541 tgccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccga 43801474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 6911100 - 6911039
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  6911100 tgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcat 6911039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 15009088 - 15009155
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||| |||||    
T  15009088 tgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccga 15009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 14999242 - 14999181
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  14999242 tgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcat 14999181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 16324912 - 16324848
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||| ||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||    
T  16324912 cacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccga 16324848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 43801701 - 43801768
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||    
T  43801701 tgccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccga 43801768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 8489444 - 8489383
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||||||||||||| ||||||||| |||||  || ||| ||||||||||||||    
T  8489444 tgccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcat 8489383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 16325080 - 16325137
Alignment:
Q  213 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||| ||||||||| ||||||||||||||| |||||| || |||||| |||||    
T  16325080 acatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaagcat 16325137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 6911259 - 6911302
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagt 252  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||    
T  6911259 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagt 6911302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 41722061 - 41722112
Alignment:
Q  213 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatg 264  Q
    ||||||||| ||||||| ||||||||  ||||||||||| ||||||||||||    
T  41722061 acatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatg 41722112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 22781126 - 22781072
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaat 263  Q
    ||||||||| ||| ||||||||| || ||||||||||||  ||||||||||||||    
T  22781126 tgccacatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaat 22781072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 41403993 - 41404051
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||| ||||||||| |||||| |||||||| ||  ||| ||||||||||||||    
T  41403993 cacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcat 41404051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 35207405 - 35207466
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  35207405 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcat 35207466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 19318215 - 19318157
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||    
T  19318215 cacatgtcttacatccaaactctaaatggagtaaatggcgcttaacctaaatggagcat 19318157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 35207249 - 35207192
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgga 266  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  35207249 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatgga 35207192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 29474646 - 29474702
Alignment:
Q  213 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagca 269  Q
    ||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  29474646 acatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatggagca 29474702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 39983870 - 39983928
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||| ||||||||| ||||||||||||||| ||| || |||||||||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcat 39983928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 19318452 - 19318516
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||| |||| ||||  |||||||||||||| ||| |||||||||||||||||| |||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 19318516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 25048257 - 25048321
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||| ||||||||  ||||||| ||||||| ||| |||||||||||||||||| |||||    
T  25048257 cacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccga 25048321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 6408484 - 6408551
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatag-agtttagcctaaatggagcatgcccg 275  Q
    ||||||||||||| ||||||||| ||||||| |||||| || |||||| |||||||||||||| ||||    
T  6408484 tgccacatgtcttgcatccaaaccctaaatgaagtaaaaagaagtttaacctaaatggagcatacccg 6408551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 19318378 - 19318445
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| |||| ||||  ||||||||||||||  || |||||||||||||||||| |||||    
T  19318378 tgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccga 19318445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 35363389 - 35363322
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||| || |||| ||||||||||||||||||||  |  |||||||||||||||||| |||||    
T  35363389 tgccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccga 35363322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 3740714 - 3740647
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||| ||| ||||||||||||||  |||||||| |||||| |||||| ||||||| |||||| |||||    
T  3740714 tgccgcatatcttacatccaaaccttaaatggaataaataaagtttaacctaaattgagcatacccga 3740647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 2834429 - 2834490
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||| ||  |||||||| ||||||||| ||||| ||  ||||||||||||||||||    
T  2834429 tgccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcat 2834490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 17370138 - 17370071
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||    
T  17370138 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccga 17370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 14076899 - 14076960
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  14076899 tgccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcat 14076960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 31194036 - 31193969
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| |||||||||  |||||||||||||| ||| |||||||||||||||||| |||||    
T  31194036 tgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 31193969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 31194195 - 31194262
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| |||||||||  |||||||||||||| ||| |||||||||||||||||| |||||    
T  31194195 tgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 31194262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 8754729 - 8754662
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||| |||||| |||||||| |||||||| |||||||||| || |||||    
T  8754729 tgccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccga 8754662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 36955524 - 36955583
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagc 268  Q
    ||||||||||||| || |||||| |||||| |||||||||||| ||||||||||||||||    
T  36955524 tgccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagc 36955583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 32347130 - 32347188
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||||||||||  |||||||||||| | ||| ||||||||||||||||||    
T  32347130 cacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatggagcat 32347188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 36955371 - 36955315
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagc 268  Q
    |||||||||| ||||||||| |||||||||||||||  || ||||||||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagc 36955315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 4371525 - 4371458
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  4371525 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 4371458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 22563281 - 22563214
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  22563281 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 22563214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 22563440 - 22563507
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||| |||||    
T  22563440 tgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccga 22563507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 12232634 - 12232573
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||    
T  12232634 tgccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagcat 12232573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 29893030 - 29893094
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||| |||||    
T  29893030 cacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccga 29893094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 17200149 - 17200082
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| || ||||||||||||||| |||||    
T  17200149 tgccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccga 17200082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 21265634 - 21265573
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||| |||||||||||||    
T  21265634 tgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcat 21265573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 34645776 - 34645833
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgga 266  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||    
T  34645776 tgccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatgga 34645833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 34645618 - 34645551
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| |||||| || ||||||||||||||||||  ||| ||||||| |||||| |||||    
T  34645618 tgccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccga 34645551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 17200308 - 17200364
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgga 266  Q
    |||||||||||||||||||||||  |||||||||||||| ||| |||| |||||||||    
T  17200308 tgccacatgtcttacatccaaaccttaaatggagtaaatggagcttag-ctaaatgga 17200364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 20296646 - 20296707
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||||||||||||||    |||||||||||||| ||| ||||||||||| ||||||    
T  20296646 tgccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaatagagcat 20296707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 21265792 - 21265853
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| ||||||||| |||||| |||||||| ||| ||||| ||||| ||||||    
T  21265792 tgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcat 21265853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 20296333 - 20296272
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||| ||||||| ||||||||| ||||||| ||||||| ||  |||||| |||||||||||    
T  20296333 tgccatatgtctttcatccaaaccctaaatgaagtaaatggatcttagccaaaatggagcat 20296272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 4682825 - 4682789
Alignment:
Q  211 ccacatgtcttacatccaaactctaaatggagtaaat 247  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaat 4682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 38500053 - 38500118
Alignment:
Q  211 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||| |||||    
T  38500053 ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccga 38500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 4041413 - 4041480
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||| |||||||||||||||  || |||||||||||||||||| |||||    
T  4041413 tgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccga 4041480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 8799388 - 8799321
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||    
T  8799388 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccga 8799321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 38499890 - 38499823
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||||||  |||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  38499890 tgccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 38499823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 53197213 - 53197279
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccg 275  Q
    ||||||||||||| ||||||||| |||||||||||||||  || |||||||||||||||||| ||||    
T  53197213 tgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccg 53197279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 43797423 - 43797362
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||||| |||||||||  |||||||||||||| ||| ||||||||||||||||||    
T  43797423 tgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcat 43797362  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 43797585 - 43797643
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||| ||||||||| |||||| |||||||| ||  ||||||||||||||||||    
T  43797585 cacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcat 43797643  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 46883486 - 46883452
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagt 243  Q
    ||||||||||||||||||||||| |||||||||||    
T  46883486 tgccacatgtcttacatccaaaccctaaatggagt 46883452  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 46883642 - 46883680
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaat 247  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  46883642 tgccacatgtcttgcatccaaaccctaaatggagtaaat 46883680  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 29828911 - 29828972
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||| |||||||||||||  ||||||||| ||||| ||| ||||| ||||| ||||||    
T  29828911 tgccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaatagagcat 29828972  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 43797871 - 43797911
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatag 249  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  43797871 tgccacatgtcttgcatccaagccctaaatggagtaaatag 43797911  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 24883042 - 24882975
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||| |||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  24883042 tgccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccga 24882975  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 33400926 - 33400859
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||| |||||||||||||  |||||||||||||| ||| ||||| ||||||||||||||||||    
T  33400926 tgccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatggagcatgcccga 33400859  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 3385543 - 3385608
Alignment:
Q  211 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||| |||||||||||||| ||||||||||||||| ||| || ||||||||||||||| |||||    
T  3385543 ccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccga 3385608  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 33156684 - 33156745
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||||||  |||||||| |||||||||||||||| || ||||||||||||||||||    
T  33156684 tgccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagcat 33156745  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 24883198 - 24883265
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||| |||| ||||||||| ||||||||||||||| ||| |||||||||||||| ||| |||||    
T  24883198 tgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccga 24883265  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 27171870 - 27171803
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    |||||||||||||||||||||||  ||||||||||||||  || |||||||||||| ||||| |||||    
T  27171870 tgccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccga 27171803  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 49777056 - 49777123
Alignment:
Q  212 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccgactc 279  Q
    |||||||||| ||||||||| |||||| || ||||| |||||||||||||||||||||| || |||||    
T  49777056 cacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcataccggactc 49777123  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 33156520 - 33156460
Alignment:
Q  215 atgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||||||||||||||||||||||| |||  |||||| |||||||||| |||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcct-aatggagcatacccga 33156460  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 49776888 - 49776823
Alignment:
Q  211 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||| ||||||||  |||||||||||||||| || ||||| |||||||||||| |||||    
T  49776888 ccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccga 49776823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 3385379 - 3385312
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||||||||||||| |||||||| |||||   || |||||||||||| ||||| |||||    
T  3385379 tgccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccga 3385312  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 5771979 - 5771918
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||| || |||||||| |||||||||||||||||||||  || |||| |||||||||||||    
T  5771979 tgccatatatcttacattcaaactctaaatggagtaaatgaagcttagtctaaatggagcat 5771918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 34970054 - 34969989
Alignment:
Q  211 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||| ||||||||  |||||| |||||||| ||||||| |||||||| ||||| |||||    
T  34970054 ccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccga 34969989  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 34622555 - 34622622
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||| |||||  |||||||||||| | ||| |||| ||||||||||||| |||||    
T  34622555 tgccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccga 34622622  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 13946993 - 13946960
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggag 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  13946993 tgccacatgtcttacatccaaaccctaaatggag 13946960  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 33401086 - 33401147
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    |||||||||||||||||| ||||  |||||  ||||||| ||| |||||||||||| |||||    
T  33401086 tgccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcat 33401147  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 13947154 - 13947190
Alignment:
Q  211 ccacatgtcttacatccaaactctaaatggagtaaat 247  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  13947154 ccacatgtcttacatccaaacgctaaatggaataaat 13947190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 16125593 - 16125526
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||| ||||||| | |||||  ||||||||||||||||||||| |||||    
T  16125593 tgccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccga 16125526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 22748659 - 22748592
Alignment:
Q  209 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 276  Q
    ||||||||||||| ||||||||   |||||||||||||| |||  |||||||||| |||||| |||||    
T  22748659 tgccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccga 22748592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 22748820 - 22748879
Alignment:
Q  211 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 270  Q
    ||||||||||| ||||||||  ||||||||||||||| ||  |||| |||||||||||||    
T  22748820 ccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagcat 22748879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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