View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16831_low_7 (Length: 293)
Name: NF16831_low_7
Description: NF16831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16831_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 17517677 - 17517954
Alignment:
| Q |
1 |
atgctgtattgctacacatattgtgcttaatcagatttgatgtatatagtctagttgttacttgttagagtttattcattgaaaaaccaaaactacaaag |
100 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17517677 |
atgctgtattgctactcaaattgtgcttaatcagatttgatgtatatagtctagttgttacttgttagagtttattcattgaaaaaccaaaactaaaaaa |
17517776 |
T |
|
| Q |
101 |
atcaatgttgtaatgcatttgtaatcttaaaacactgcaggtgtatatgttttacactagcactatacttttgatgaacaaagttctttgattttgattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17517777 |
atcaatgttgtaatgcatttgtaatcttaaaacactgcaggtgtatatgttttacactagcactgtacttttgatgaacaaagttctttgattttgattg |
17517876 |
T |
|
| Q |
201 |
aagaatgagtgcatctgagggatcagctgagggagcagcagaagtacatattgttcatgttagtgataggcagaatgt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17517877 |
aagaatgagtgcatctgagggatcagctgagggagcagcagaagtacatattgttcatgttagtgataggcagaatgt |
17517954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University