View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16831_low_8 (Length: 281)
Name: NF16831_low_8
Description: NF16831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16831_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 40775080 - 40775346
Alignment:
| Q |
13 |
tgaaagctgattttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacaaataattatagt |
112 |
Q |
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| T |
40775080 |
tgaaagctgattttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataattatagt |
40775179 |
T |
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| Q |
113 |
gtctaattcacgcaataacaaaacatattcacatgctagtacttaccatgctggagatctcnnnnnnnccccttcttgtgtgtcctcacccacatattta |
212 |
Q |
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| T |
40775180 |
gtctaattcatgcaataacaaaac--attcacatgcttgcacttaccatgctggagatctctttttttccccttcttgtgtgtcctcacccacatattta |
40775277 |
T |
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| Q |
213 |
tctgagttaacttcatacttgtaagtaggtgggaagtttatcagcccctctttccatccttcaaataca |
281 |
Q |
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| T |
40775278 |
tctgagttaacttcatacttgtaagtaggtgggaagtttatcagcccctctttccatccttcaaataca |
40775346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 40768448 - 40768714
Alignment:
| Q |
13 |
tgaaagctgattttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacaaataattatagt |
112 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40768448 |
tgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataattatagt |
40768547 |
T |
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| Q |
113 |
gtctaattcacgcaataacaaaacatattcacatgctagtacttaccatgctggagatctcnnnnnnnccccttcttgtgtgtcctcacccacatattta |
212 |
Q |
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| T |
40768548 |
gtctaattcatgcaacaacaaa--aaattcacatgcttgcacttaccatgctggagctctccttttttcaccttcttgtgtgttcccacccacatgttta |
40768645 |
T |
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| Q |
213 |
tctgagttaacttcatacttgtaagtaggtgggaagtttatcagcccctctttccatccttcaaataca |
281 |
Q |
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| T |
40768646 |
tcagagttaaattcatatttgtatgtgggtgggaagtttattaacccctctttccatccctcaaataca |
40768714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 4679965 - 4679898
Alignment:
| Q |
24 |
tttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcgatcacacctgcat |
91 |
Q |
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| T |
4679965 |
tttctgcacgttcataatttagttgctttattccttttcctagccacaatattcgatcacacctgcat |
4679898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 4679764 - 4679680
Alignment:
| Q |
197 |
ctcacccacatatttatctgagttaacttcatacttgtaagtaggtgggaagtttatcagcccctctttccatccttcaaataca |
281 |
Q |
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|||||| |||||| ||||||| |||| |||||| |||||||| |||| |||||||||| ||| ||||||||||| ||||||||| |
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| T |
4679764 |
ctcaccaacatatctatctgaattaatttcatatttgtaagttggtgcaaagtttatcaacccttctttccatccatcaaataca |
4679680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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