View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16831_low_9 (Length: 237)
Name: NF16831_low_9
Description: NF16831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16831_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 18416484 - 18416363
Alignment:
| Q |
19 |
ggccaacttaactgataaacaaatgttgtctattagtttggaatatgggattgatataagcagagttcgcggagttgttgataatgctaatcgaatttta |
118 |
Q |
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| T |
18416484 |
ggccaacttaactgataaacaaatgttgtctattagtttggaatatgggattgatataagcagagttcgaggagttgttgataatgctaatcgaatttta |
18416385 |
T |
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| Q |
119 |
gaggtaaaaatcgtcaaaacct |
140 |
Q |
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| T |
18416384 |
gaggtaaaaaacgtcaaaacct |
18416363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 18416360 - 18416314
Alignment:
| Q |
173 |
gttctaagttgcggttgcagttacaccgcggacattaacattgaaac |
219 |
Q |
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| T |
18416360 |
gttctaagttgcggttgcagttacaccgcgaacattaacattgaaac |
18416314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 30343442 - 30343353
Alignment:
| Q |
19 |
ggccaacttaactgataaacaaatgttgtctattagtttggaatatgggattgatataagcagagttcgcggagttgttgataatgctaa |
108 |
Q |
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| T |
30343442 |
ggccaatttgactgataagcaaatgatgtctattagttcagaatatagcattgacataagaaaagttagaggagttgttgataatgctaa |
30343353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 26803203 - 26803096
Alignment:
| Q |
19 |
ggccaacttaactgataaacaaatgttgtctattagtttggaatatgggattgatataagcagagttcgcggagttgttgataatgctaatcgaatttta |
118 |
Q |
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| T |
26803203 |
ggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataatgctaaccaaatttta |
26803104 |
T |
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| Q |
119 |
gaggtaaa |
126 |
Q |
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||||||| |
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| T |
26803103 |
caggtaaa |
26803096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 18986349 - 18986426
Alignment:
| Q |
31 |
tgataaacaaatgttgtctattagtttggaatatgggattgatataagcagagttcgcggagttgttgataatgctaa |
108 |
Q |
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|||||| |||||| |||||||||||| |||||| | ||||| ||||| | |||| | |||||||||||||||||||| |
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| T |
18986349 |
tgataagcaaatgatgtctattagttcagaatatagcattgacataagaaaagttagaggagttgttgataatgctaa |
18986426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 23919168 - 23919091
Alignment:
| Q |
31 |
tgataaacaaatgttgtctattagtttggaatatgggattgatataagcagagttcgcggagttgttgataatgctaa |
108 |
Q |
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|||||| |||||| |||||||||||| |||||| | ||||| ||||| | |||| | |||||||||||||||||||| |
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| T |
23919168 |
tgataagcaaatgatgtctattagttcagaatatagcattgacataagaaaagttagaggagttgttgataatgctaa |
23919091 |
T |
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