View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_high_12 (Length: 409)
Name: NF16832_high_12
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 33383958 - 33384335
Alignment:
| Q |
18 |
ttccagatgtttattcttacgatatgagatttgatatgtcagttagagatagagagtccaatataagagtagcatctggttcttcagctcctttatctgt |
117 |
Q |
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| T |
33383958 |
ttccagatgtttattcttacgatatgagatttgatatgtcagttagagatagagagtccaatataagagtagcatctggttcttcagctcctttatctgt |
33384057 |
T |
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| Q |
118 |
tggtgatcaagtttatgatgatcctcttactatttcaaattccacatcagaaactcctatggtgatgttcaacaatggcagcttgttcaacattagctac |
217 |
Q |
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| T |
33384058 |
tggtgatcaagtttatgatgatcctcttactatttcaaattccacatcagaaactcctatggtgatgttcaacaatggcagcttgttcaacattagctac |
33384157 |
T |
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| Q |
218 |
aagattactatattttctaattcaaccttatataacaggaattcagtgtttaatttgtcttcttatagagtgaagatttcagcagaaggtatttatgatg |
317 |
Q |
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| T |
33384158 |
aagattactatattttctaattcaaccttatataacaggaattcagtgtttaatttgtcttcttatagagtgaagatttcagcagaaggtatttatgatg |
33384257 |
T |
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| Q |
318 |
caaggacaggaaccctgtgtatgattggttgccgcgatcttaactcaaaggttggaacaccgttagccggctctgtgg |
395 |
Q |
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| T |
33384258 |
caaggacaggaaccctgtgtatgattggttgccgcgatcttaactcaaaggctggaacaccgttagccggctctgtgg |
33384335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 33378089 - 33378150
Alignment:
| Q |
287 |
gtgaagatttcagcagaaggtatttatgatgcaaggacaggaaccctgtgtatgattggttg |
348 |
Q |
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| T |
33378089 |
gtgaagatttcggcagaaggaatttatgatgcaagatatggaaccttgtgtatgattggttg |
33378150 |
T |
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