View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16832_high_30 (Length: 256)
Name: NF16832_high_30
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5051028 - 5051268
Alignment:
| Q |
1 |
tgttatttgcatgtctatcacttggaaaattaatgatgtctcaattttcatcattgttgaaagggtcatacatgagaacactagtcatccctataaaata |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051028 |
tgttatttgcatatctatcacttggaaaattaatgatgtctcaattttcatcattgttgaaagggtcatacatgagaacactagtcatccctataaaata |
5051127 |
T |
|
| Q |
101 |
caaaatcccttcatgtgcaactccaggctgcgaaatggcagactgtgtaaagctaaaactatttgggaaggacacttttttccccctccattgtcctgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5051128 |
caaaatcccttcatgtgcaactccaggcagcgaaatggcagactgtgtaaaactaaaaccatttgggaaggacacttttttccccctccattgtcctgtt |
5051227 |
T |
|
| Q |
201 |
tctgttgagaaaacaaccatttcaagaatgtcattaattgt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5051228 |
tctgttgagataacaaccatttcaagaatgtcattaattgt |
5051268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 51274399 - 51274191
Alignment:
| Q |
17 |
atcacttggaaaattaatgatgtctcaattttcatcattgttgaaagggtcatacatgagaacactagtcatccctataaaatacaaaatcccttcatgt |
116 |
Q |
| |
|
|||||| |||||||||||||| || || |||||||||||||||||||||||||||| |||| |||||| | || || ||||||||||| ||||||| |
|
|
| T |
51274399 |
atcactaggaaaattaatgatttcacatttttcatcattgttgaaagggtcatacactagaatactagtttttcccatgaaatacaaaatgttttcatgt |
51274300 |
T |
|
| Q |
117 |
gcaactccaggctgcgaaatggcagactgtgtaaagctaaaactatttgggaaggacacttttttccccctccattgtcctgattctgttgagaaaacaa |
216 |
Q |
| |
|
||||| | | || ||||||||| |||||||||| |||| ||||||| ||||||| ||||| ||||||||||| | ||| | |||||||||| |
|
|
| T |
51274299 |
gcaacaacgtacggcaaaatggcaggtcgtgtaaagcttaaaccatttgggcaggacacattttttttgctccattgtccagtttccgaagagaaaacaa |
51274200 |
T |
|
| Q |
217 |
ccatttcaa |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
51274199 |
ccatttcaa |
51274191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 38783390 - 38783334
Alignment:
| Q |
16 |
tatcacttggaaaattaatgatgtctcaattttcatcattgttgaaagggtcataca |
72 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||| |
|
|
| T |
38783390 |
tatcacttggaaaattaatgaggtcacatttttcaacattgttgaaagggtcataca |
38783334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University