View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16832_high_4 (Length: 557)

Name: NF16832_high_4
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16832_high_4
NF16832_high_4
[»] chr5 (13 HSPs)
chr5 (270-543)||(36530915-36531191)
chr5 (99-209)||(36530766-36530876)
chr5 (15-82)||(36530559-36530626)
chr5 (465-529)||(25683296-25683360)
chr5 (441-512)||(734382-734453)
chr5 (441-512)||(11795326-11795397)
chr5 (409-516)||(12305683-12305790)
chr5 (441-523)||(4985307-4985389)
chr5 (453-530)||(25773794-25773871)
chr5 (465-529)||(1056690-1056754)
chr5 (465-525)||(33239349-33239409)
chr5 (441-529)||(36239463-36239551)
chr5 (465-529)||(37900690-37900754)
[»] chr6 (8 HSPs)
chr6 (426-522)||(847804-847900)
chr6 (433-510)||(879279-879356)
chr6 (433-529)||(3621605-3621701)
chr6 (465-529)||(17942589-17942653)
chr6 (465-529)||(29238538-29238602)
chr6 (427-529)||(29260338-29260440)
chr6 (459-529)||(30734544-30734614)
chr6 (465-529)||(8235771-8235835)
[»] chr1 (11 HSPs)
chr1 (106-191)||(25637794-25637878)
chr1 (465-530)||(49756678-49756743)
chr1 (426-529)||(12721448-12721551)
chr1 (398-529)||(32168438-32168569)
chr1 (465-523)||(33082896-33082954)
chr1 (398-524)||(51613391-51613517)
chr1 (465-530)||(23526384-23526449)
chr1 (452-529)||(40261339-40261416)
chr1 (441-529)||(19455525-19455613)
chr1 (433-529)||(44182775-44182871)
chr1 (453-529)||(46771784-46771860)
[»] chr8 (14 HSPs)
chr8 (436-528)||(27039015-27039107)
chr8 (441-529)||(26628859-26628947)
chr8 (441-522)||(28562574-28562655)
chr8 (441-529)||(35866759-35866847)
chr8 (416-506)||(34706615-34706706)
chr8 (459-525)||(33751241-33751307)
chr8 (467-529)||(45400839-45400901)
chr8 (457-529)||(6843364-6843437)
chr8 (456-521)||(38006175-38006240)
chr8 (449-501)||(6642090-6642142)
chr8 (432-496)||(9706634-9706698)
chr8 (441-529)||(11707614-11707702)
chr8 (441-529)||(12342743-12342831)
chr8 (453-529)||(37345717-37345793)
[»] chr4 (17 HSPs)
chr4 (426-522)||(47596750-47596846)
chr4 (432-525)||(17038334-17038427)
chr4 (441-529)||(6128992-6129080)
chr4 (433-529)||(50623432-50623528)
chr4 (427-529)||(8735401-8735503)
chr4 (427-529)||(19692868-19692970)
chr4 (427-529)||(19703453-19703555)
chr4 (465-529)||(21064907-21064971)
chr4 (441-524)||(42099734-42099817)
chr4 (426-529)||(45725547-45725650)
chr4 (409-523)||(13423714-13423828)
chr4 (435-529)||(40411963-40412057)
chr4 (44-84)||(36774463-36774503)
chr4 (409-529)||(38617810-38617930)
chr4 (427-503)||(39683870-39683946)
chr4 (465-529)||(50768008-50768072)
chr4 (441-529)||(53125368-53125456)
[»] chr2 (6 HSPs)
chr2 (433-525)||(28110130-28110222)
chr2 (441-529)||(37284561-37284648)
chr2 (467-529)||(39561959-39562021)
chr2 (433-494)||(6212402-6212463)
chr2 (441-529)||(9369997-9370085)
chr2 (465-529)||(12969807-12969871)
[»] scaffold0004 (1 HSPs)
scaffold0004 (426-522)||(234305-234399)
[»] chr7 (7 HSPs)
chr7 (487-527)||(2311830-2311870)
chr7 (447-507)||(6737258-6737318)
chr7 (426-529)||(18194346-18194449)
chr7 (433-529)||(24283597-24283693)
chr7 (441-529)||(3091659-3091747)
chr7 (437-529)||(31815200-31815292)
chr7 (493-529)||(47652871-47652907)
[»] chr3 (9 HSPs)
chr3 (441-529)||(18355911-18355999)
chr3 (426-529)||(43159895-43159998)
chr3 (453-529)||(32835044-32835120)
chr3 (441-529)||(53559654-53559742)
chr3 (436-491)||(26972119-26972174)
chr3 (459-529)||(199001-199071)
chr3 (426-512)||(20848871-20848957)
chr3 (465-529)||(3383222-3383286)
chr3 (465-529)||(13703358-13703422)
[»] scaffold0325 (1 HSPs)
scaffold0325 (426-529)||(323-426)
[»] scaffold0054 (1 HSPs)
scaffold0054 (465-523)||(45605-45663)
[»] scaffold0280 (1 HSPs)
scaffold0280 (441-529)||(8177-8265)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 270 - 543
Target Start/End: Original strand, 36530915 - 36531191
Alignment:
Q  270 ttcatgtgagcaaag--taggtgcctaaagagcaatttttactccccatgtgattgaggcccaatagacctcattttaccgatgcatagg----aagccc 363  Q
    ||||||||||||||   ||||||| |||||||||||||| | || |||||||||||||||||| |||||||||||||| ||||| |||||    ||||||    
T  36530915 ttcatgtgagcaaaccataggtgc-taaagagcaattttcaatcaccatgtgattgaggcccattagacctcattttatcgatgaataggtaggaagccc 36531013  T
Q  364 aatggggctgt---ggacagagaatttaactatgtcctactccctcttttccttattatttgtagcttttatagaaaaaatttgtttctatttacttatc 460  Q
    | ||    |||   ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  36531014 agtgataatgtctaggactaagaaattaactatgtcctactccctcttttccttattatttgtagcttttatagaaaa-----gtttctatttacttatc 36531108  T
Q  461 attatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagagatgaaatggataaat 543  Q
    ||||||||||||||||||| |||||  ||||| |||||||| || |||||||||||||||||| |||||||||||||||||||    
T  36531109 attatcaaatttcaatgcagcatatgctattgctttatcaaaaacactcttaagtatttattgaagagatgaaatggataaat 36531191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 36530766 - 36530876
Alignment:
Q  99 tacaagtttacaactctagaaaaccattcattgccaccacaaagcaagcataaaccagcagctaaacaaccttaatccaaatcaagaaattgcacaaaca 198  Q
    |||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||    
T  36530766 tacaagtttacaactctagaaaacaattcattaccaccaaaaatcaagcataaaccaacaactaaacaaccttaatccaaatcaagaaactgcacaaaca 36530865  T
Q  199 aaaattgcaat 209  Q
    |||||| ||||    
T  36530866 aaaatttcaat 36530876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 36530559 - 36530626
Alignment:
Q  15 cataggtacctcgaatggatgaaaatatcccaacgacaattaactattatttgcttttaaataatagt 82  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||||||||||    
T  36530559 cataggtacctcgaattgatgaaaatatcccaacgacgattaactattgtttgcttctaaataatagt 36530626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 25683296 - 25683360
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||||||  ||||||||||| |||||||||| ||||  ||||||||| |||||    
T  25683296 tcaagtttcaatgcaacattaattattgttttgtcaataatacccttacatatttattgtagaga 25683360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 734382 - 734453
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactctta 512  Q
    ||||||||  ||||||| ||| | |||| ||||||| ||||||  ||||||| |||||||||||||||||||    
T  734382 tttgtttcactttacttgtcactttcaagtttcaatacaacattaattattggtttatcaataatactctta 734453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 11795326 - 11795397
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactctta 512  Q
    ||||||||  |||| |||||| | |||| ||||||||||||||  ||||| | |||||||||||||||||||    
T  11795326 tttgtttcactttatttatcactttcaagtttcaatgcaacattaattataggtttatcaataatactctta 11795397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 516
Target Start/End: Complemental strand, 12305790 - 12305683
Alignment:
Q  409 ttccttattatttgtagcttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatact 508  Q
    |||||| ||| |||| |||||| |||| | ||| || | |||||  ||| ||||| ||||| |||||||||||||  ||||||||||| ||||||||||     
T  12305790 ttcctttttacttgttgcttttgtagatataatgtgatcctattggcttttcattttcaaagttcaatgcaacattgattattgttttgtcaataatacc 12305691  T
Q  509 cttaagta 516  Q
    ||| ||||    
T  12305690 cttgagta 12305683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 523
Target Start/End: Complemental strand, 4985389 - 4985307
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattg 523  Q
    ||||||||||||||  | ||| | ||||| |||||||||||||  | || ||||||||||||| ||| ||||| |||||||||    
T  4985389 tttgtttctatttaactgtcactttcaaagttcaatgcaacattaaataatgttttatcaatattacccttaattatttattg 4985307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 530
Target Start/End: Complemental strand, 25773871 - 25773794
Alignment:
Q  453 tacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagagat 530  Q
    ||||||||| | |||| ||||||||||||||  |||||||| || |||||||||| |||   ||||||||| ||||||    
T  25773871 tacttatcactttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagat 25773794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 1056690 - 1056754
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||||||  ||||||  ||| |||||||||||||||  ||||||||| |||||    
T  1056690 tcaagtttcaatgcaacattaattattagtttgtcaataatactcttatttatttattgtagaga 1056754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 33239349 - 33239409
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    ||||| |||||||||||||  ||| ||||||| ||||||| ||  ||||||||||||||||    
T  33239349 tcaaagttcaatgcaacattaatttttgttttgtcaataacacctttaagtatttattgca 33239409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 36239463 - 36239551
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||  | ||| | ||||| |||||||||||||  | |  ||||||||||||| ||| ||||| |||||||||| ||||    
T  36239463 tttgtttctatttaactgtcactttcaaagttcaatgcaacattaaatgatgttttatcaatattacccttaattatttattgcggaga 36239551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 37900690 - 37900754
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||||||  |||||||| || |||||||||| |||   |||||||||||||||    
T  37900690 tcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgcagaga 37900754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 426 - 522
Target Start/End: Original strand, 847804 - 847900
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttatt 522  Q
    ||||| |||||||| | |||| |||||||||| ||||| ||||| |||||||||||||  ||||||| ||| |||||||||||||||| ||||||||    
T  847804 cttttgtagaaaaattgtgttcctatttacttgtcattttcaaagttcaatgcaacattaattattgctttgtcaataatactcttaaatatttatt 847900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 510
Target Start/End: Original strand, 879279 - 879356
Alignment:
Q  433 agaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactct 510  Q
    ||||||| | |||| |||||||||| || || ||||| |||||||||||||  ||||||||||| ||||||| |||||    
T  879279 agaaaaattgtgttcctatttacttttctttttcaaagttcaatgcaacattaattattgttttgtcaataaaactct 879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 529
Target Start/End: Original strand, 3621605 - 3621701
Alignment:
Q  433 agaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||| ||||||||||  ||||| | ||||| |||||||||||||  | ||||||| || ||||| ||  ||||  |||||||||||||||    
T  3621605 agaaaaaatttatttctatttaactatcactttcaaagttcaatgcaacattaaatattgttctaccaatattatccttagttatttattgcagaga 3621701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 17942653 - 17942589
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||||||  ||||||||||| |||||||||| ||||  ||||||||| |||||    
T  17942653 tcaagtttcaatgcaacattaattattgttttgtcaataatacccttacatatttattgtagaga 17942589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 29238602 - 29238538
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||| ||||||| |||||  ||||||||||| |||| ||| ||||||| |||||||||||||||    
T  29238602 tcaaagttcaatgtaacattaattattgttttgtcaagaattctcttaactatttattgcagaga 29238538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 529
Target Start/End: Complemental strand, 29260440 - 29260338
Alignment:
Q  427 ttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcag 526  Q
    ||||| |||| || |||||||| |  ||||| ||||| |||| ||||||||||||||  |||| ||| || |||||||||| ||||  ||||||||| ||    
T  29260440 ttttagagaataattttgtttcaaaatacttgtcattttcaagtttcaatgcaacattaattactgtcttgtcaataatacccttacatatttattgtag 29260341  T
Q  527 aga 529  Q
    |||    
T  29260340 aga 29260338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 529
Target Start/End: Original strand, 30734544 - 30734614
Alignment:
Q  459 tcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||| |||||||||||||||||||  |||||| | ||||||||||||| |||   ||||||||| |||||    
T  30734544 tcattttcaaatttcaatgcaacattaattattatcttatcaataatacccttgcatatttattgtagaga 30734614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 8235835 - 8235771
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||| ||  |||||||| ||||||||||||| ||||  ||||||||| |||||    
T  8235835 tcaagtttcaatgcaatattaattattgtcttatcaataatacccttacatatttattgtagaga 8235771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 25637794 - 25637878
Alignment:
Q  106 ttacaactctagaaaaccattcattgccaccacaaagcaagcataaaccagcagctaaacaaccttaatccaaatcaagaaattgc 191  Q
    |||||||||| |||||| |||||||||||   |||||||| |||||||||||| |||||||||| ||| |||||||||||||||||    
T  25637794 ttacaactcttgaaaacaattcattgccattgcaaagcaaacataaaccagcaactaaacaacc-taacccaaatcaagaaattgc 25637878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 530
Target Start/End: Original strand, 49756678 - 49756743
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagagat 530  Q
    ||||| ||||||||||||   ||||||||||| ||||| |||| ||||||||||||||||||||||    
T  49756678 tcaaagttcaatgcaacaataattattgttttgtcaattatacccttaagtatttattgcagagat 49756743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 529
Target Start/End: Original strand, 12721448 - 12721551
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    |||||| |||||||| ||||| |||||||  ||||||| ||||| |||||||||||||  | | |||||||| ||| | | | ||||  |||||||||||    
T  12721448 cttttagagaaaaaaattgttcctatttaactatcattttcaaagttcaatgcaacattaaatgttgttttaccaagatttcccttagatatttattgca 12721547  T
Q  526 gaga 529  Q
    ||||    
T  12721548 gaga 12721551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 529
Target Start/End: Complemental strand, 32168569 - 32168438
Alignment:
Q  398 tactccctcttttccttattatttgtagcttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgtttta 497  Q
    |||||||||  |||||| ||| ||||  |||||| ||||||  ||||||||||||||  | ||| | ||||| ||||||||| |||  | | ||||||||    
T  32168569 tactccctccgttcctttttaattgtcacttttagagaaaatttttgtttctatttaactgtcagtttcaaagttcaatgcatcattaaatgttgtttta 32168470  T
Q  498 tcaataatactcttaagtatttattgcagaga 529  Q
    |||||| ||| ||||  |||||||||| ||||    
T  32168469 tcaatattacccttagatatttattgcggaga 32168438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 33082954 - 33082896
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattg 523  Q
    |||||||||||||||| ||  |||||||| || |||||||||| ||||| |||||||||    
T  33082954 tcaaatttcaatgcaatattaattattgtcttctcaataatacccttaaatatttattg 33082896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 524
Target Start/End: Original strand, 51613391 - 51613517
Alignment:
Q  398 tactccctcttttccttattatttgtagcttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgtttta 497  Q
    |||||||||  |||||| ||| ||||  |||||| ||||||  |||||| |||||||  | ||| | ||||| ||||||||| |||  | | ||||||||    
T  51613391 tactccctccattcctttttaattgtcacttttagagaaaatttttgttcctatttaactgtcactttcaaagttcaatgcatcattaaatgttgtttta 51613490  T
Q  498 tcaataatactcttaagtatttattgc 524  Q
    |||||| ||||||||  ||||||||||    
T  51613491 tcaatattactcttagatatttattgc 51613517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 530
Target Start/End: Complemental strand, 23526449 - 23526384
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagagat 530  Q
    |||| ||||||||||||||  |||||||| || |||||||||| ||||  ||||||||| ||||||    
T  23526449 tcaagtttcaatgcaacattaattattgtcttgtcaataatacccttacatatttattgtagagat 23526384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 529
Target Start/End: Original strand, 40261339 - 40261416
Alignment:
Q  452 ttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||| ||| | |||| ||||||||||||||  ||||||| ||| |||||||||| ||||  ||||||||| |||||    
T  40261339 ttacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataatacccttacatatttattgtagaga 40261416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 19455613 - 19455525
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||||| ||||| || ||| | ||||| |||||||||||||  | | |||||||| ||||| ||| ||||| |||||||||| ||||    
T  19455613 tttgtttcaatttaattgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattacccttaattatttattgcggaga 19455525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 529
Target Start/End: Original strand, 44182775 - 44182871
Alignment:
Q  433 agaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||||||||||  | ||| | ||||| |||||||||||||  | | |||||||| ||||| ||  ||||  |||||||||| ||||    
T  44182775 agaaaaaatttgtttctatttaactgtcactctcaaagttcaatgcaacattaaatgttgttttaccaatattatccttagttatttattgcggaga 44182871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 529
Target Start/End: Complemental strand, 46771860 - 46771784
Alignment:
Q  453 tacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||| | |||| |||||||| |||||  |||||| | || |||||||||||||||  ||||||||| |||||    
T  46771860 tacttatcactttcaagtttcaatgtaacattaattattttcttgtcaataatactcttacatatttattgtagaga 46771784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 528
Target Start/End: Original strand, 27039015 - 27039107
Alignment:
Q  436 aaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagag 528  Q
    ||||| ||||| || ||||||| ||||| ||||| |||||  |||||| ||||||||||||||||||||| | ||||||||||||||| ||||    
T  27039015 aaaaaattgttcctgtttacttgtcattctcaaagttcaaaacaacatttattattgttttatcaataatgcccttaagtatttattgtagag 27039107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 26628859 - 26628947
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||  |||| || ||||| |||| ||||||||||||||  ||||||| |||||||||||||| ||||  ||||||||| |||||    
T  26628859 tttgtttcactttatttgtcattttcaagtttcaatgcaacattaattattgatttatcaataatacccttacctatttattgtagaga 26628947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 522
Target Start/End: Complemental strand, 28562655 - 28562574
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttatt 522  Q
    ||||||||  ||||||| ||| | |||| ||||||||||||||  ||||||| |||||||||| ||||||||  ||||||||    
T  28562655 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaatattactcttacctatttatt 28562574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 35866847 - 35866759
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||  ||||||| ||| | |||| ||||||| ||||||  ||||||| |||||||||||||||||||  ||| ||||| |||||    
T  35866847 tttgtttcattttacttgtcactttcaagtttcaattcaacattaattattggtttatcaataatactcttacatatctattgtagaga 35866759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 506
Target Start/End: Complemental strand, 34706706 - 34706615
Alignment:
Q  416 ttatttgtagcttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatat-attattgttttatcaataata 506  Q
    ||||||||  |||||||||||||| |||||||||||||| || ||||| | |||  ||||| |||||| | |||||| |||| |||||||||    
T  34706706 ttatttgtcacttttatagaaaaattttgtttctatttatttgtcatttttaaaactcaatacaacatttaattattattttgtcaataata 34706615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 525
Target Start/End: Original strand, 33751241 - 33751307
Alignment:
Q  459 tcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    ||||| ||||| |||||||||| ||  ||||||||||||||||||||||  | || |||||||||||    
T  33751241 tcattttcaaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgca 33751307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 529
Target Start/End: Original strand, 45400839 - 45400901
Alignment:
Q  467 aaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||||||||||||||  ||||||  ||||||||||||| |||||  ||||||||| |||||    
T  45400839 aaatttcaatgcaacattaattattaatttatcaataatattcttacttatttattgtagaga 45400901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 6843364 - 6843437
Alignment:
Q  457 tatcattatcaaatttcaatgcaacatatattattgtttt-atcaataatactcttaagtatttattgcagaga 529  Q
    ||||||| | ||| ||||||| ||| | ||||||| |||| ||||||||||||||||| ||||| |||||||||    
T  6843364 tatcatttttaaagttcaatgtaacgtttattatttttttgatcaataatactcttaaatattttttgcagaga 6843437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 521
Target Start/End: Complemental strand, 38006240 - 38006175
Alignment:
Q  456 ttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttat 521  Q
    |||||||| | ||| | |||||||| ||  ||||||||| |||||||||||| |||||||||||||    
T  38006240 ttatcatttttaaaatacaatgcaatattgattattgttctatcaataatacgcttaagtatttat 38006175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 6642090 - 6642142
Alignment:
Q  449 tatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaa 501  Q
    ||||||| ||| ||| ||||| || ||||||||||||||||||||||| ||||    
T  6642090 tatttacatatgattttcaaagtttaatgcaacatatattattgttttgtcaa 6642142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 496
Target Start/End: Original strand, 9706634 - 9706698
Alignment:
Q  432 tagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgtttt 496  Q
    ||||| || |||||||||||||||||  |||| ||||||||||||||| |||  | |||||||||    
T  9706634 tagaagaattttgtttctatttacttgccattttcaaatttcaatgcaccattaactattgtttt 9706698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 11707702 - 11707614
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||  | ||| | ||||| |||||||||||||  | |  ||||||||||||| ||| ||||| |||||||||| ||||    
T  11707702 tttgtttctatttaactgtcactttcaaagttcaatgcaacattaaatgatgttttatcaatattacccttaattatttattgcggaga 11707614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 12342831 - 12342743
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||  ||||| | ||||| |||||||||||||  | |||||||||| ||||| ||   |||| |||||||||| ||||    
T  12342831 tttgtttctatttaactatcactttcaaagttcaatgcaacattaaatattgttttaccaatattatctttaactatttattgcggaga 12342743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 529
Target Start/End: Complemental strand, 37345793 - 37345717
Alignment:
Q  453 tacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||| ||||| |||| ||||||||||||||  |||||||| || |||||||||| |||   ||||||||| |||||    
T  37345793 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagaga 37345717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 522
Target Start/End: Complemental strand, 47596846 - 47596750
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttatt 522  Q
    ||||| |||||||  |||||||||||||| || ||||| ||||| |||||||||| ||  | |||||||||||||||| ||||||||| ||||||||    
T  47596846 cttttgtagaaaatttttgtttctatttaattgtcattttcaaagttcaatgcaatattgagtattgttttatcaatattactcttaattatttatt 47596750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 525
Target Start/End: Original strand, 17038334 - 17038427
Alignment:
Q  432 tagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    |||||||  ||| ||||||||||||| ||||| | ||| ||  |||||||||  |||||||| |||||||||||||  ||||||||||||||||    
T  17038334 tagaaaatgtttatttctatttacttgtcattttgaaagtttcatgcaacattaattattgtcttatcaataataccattaagtatttattgca 17038427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 6128992 - 6129080
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||  ||||||| ||| | |||| ||||||||||||||  ||||||| |||||||||||||| ||||  ||||||||| |||||    
T  6128992 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataatacccttatctatttattgtagaga 6129080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 529
Target Start/End: Original strand, 50623432 - 50623528
Alignment:
Q  433 agaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||||||||||||||||||| || ||| | ||||| |||||||||||||  | | |||||||| ||||| ||  ||||| |||||||||| ||||    
T  50623432 agaaaaaatttgtttctatttaattgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattatccttaattatttattgcggaga 50623528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 529
Target Start/End: Original strand, 8735401 - 8735503
Alignment:
Q  427 ttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcag 526  Q
    ||||| ||||||| |||||||||||||| || ||| | ||||| |||||||||| ||  | |||||||||| ||||| || |||||  |||||||||| |    
T  8735401 ttttagagaaaaattttgtttctatttaattgtcactttcaaagttcaatgcaatattaaatattgttttaccaatattattcttagttatttattgcgg 8735500  T
Q  527 aga 529  Q
    |||    
T  8735501 aga 8735503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 529
Target Start/End: Complemental strand, 19692970 - 19692868
Alignment:
Q  427 ttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcag 526  Q
    ||||| |||| || ||||||||  ||||||| ||| | |||| ||||||||||||||  ||||||| ||||||||||| || ||||  ||||||||| ||    
T  19692970 ttttagagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataacacccttacttatttattgtag 19692871  T
Q  527 aga 529  Q
    |||    
T  19692870 aga 19692868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 529
Target Start/End: Complemental strand, 19703555 - 19703453
Alignment:
Q  427 ttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcag 526  Q
    ||||| |||| || ||||||||  ||||||| ||| | |||| ||||||||||||||  ||||||| ||||||||||| || ||||  ||||||||| ||    
T  19703555 ttttagagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataacacccttacttatttattgtag 19703456  T
Q  527 aga 529  Q
    |||    
T  19703455 aga 19703453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 21064971 - 21064907
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||||||||||||||||  |||||||| ||  ||||||||||||||  ||||||||| |||||    
T  21064971 tcaaatttcaatgcaacattaattattgtcttgacaataatactcttacatatttattgtagaga 21064907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 524
Target Start/End: Original strand, 42099734 - 42099817
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgc 524  Q
    ||||||||||||||  ||||| | ||||| |||||||||||||  | |  ||||||||||||| ||| ||||| ||||||||||    
T  42099734 tttgtttctatttaactatcactttcaaagttcaatgcaacattaaatggtgttttatcaatattacccttaattatttattgc 42099817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 529
Target Start/End: Original strand, 45725547 - 45725650
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    ||||| || |||||| ||||||||||||| || ||||| | ||| |||||||||| ||  | |||| ||||||||||| ||  ||||| |||||||| ||    
T  45725547 cttttgtaaaaaaaaattgtttctatttaattgtcatttttaaagttcaatgcaatattaaatattattttatcaatattatccttaattatttattaca 45725646  T
Q  526 gaga 529  Q
    ||||    
T  45725647 gaga 45725650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 523
Target Start/End: Complemental strand, 13423828 - 13423714
Alignment:
Q  409 ttccttattatttgtagcttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatact 508  Q
    |||||| ||| ||||  ||||| ||||||| |||||||||||||||||| || || ||||| || |||||| |||  ||| |||  || ||||||||||     
T  13423828 ttcctttttacttgtcacttttgtagaaaatatttgtttctatttacttttcgttttcaaagtttaatgcagcattgattgttgacttgtcaataatacc 13423729  T
Q  509 cttaagtatttattg 523  Q
     |||| |||||||||    
T  13423728 tttaactatttattg 13423714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 529
Target Start/End: Original strand, 40411963 - 40412057
Alignment:
Q  435 aaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||| ||||| |||||||  | ||||| ||||| ||||||| |||||  | |||||||||||||||| ||  ||||| |||||||||| ||||    
T  40411963 aaaaaaattgttcctatttaactgtcattttcaaagttcaatgtaacattaaatattgttttatcaatattatccttaattatttattgcggaga 40412057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 36774503 - 36774463
Alignment:
Q  44 ccaacgacaattaactattatttgcttttaaataatagtta 84  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  36774503 ccaacgacgattaactattatttccttttaaacaatagtta 36774463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 529
Target Start/End: Original strand, 38617810 - 38617930
Alignment:
Q  409 ttccttattatttgtagcttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatact 508  Q
    |||||| ||| ||||  |||||| |||||  || |||| ||||||| || ||| | ||||| || ||||||||||  | |||||||||||||||| ||      
T  38617810 ttcctttttaattgtcacttttagagaaactatctgttcctatttaattgtcactttcaaagtttaatgcaacattaaatattgttttatcaatattatc 38617909  T
Q  509 cttaagtatttattgcagaga 529  Q
    ||||  |||||||||||||||    
T  38617910 cttatatatttattgcagaga 38617930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 503
Target Start/End: Complemental strand, 39683946 - 39683870
Alignment:
Q  427 ttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaata 503  Q
    |||| |||||||| ||||||||||||||  | ||| | | ||| |||||||||||||  | ||||||||||||||||    
T  39683946 ttttgtagaaaaattttgtttctatttaactgtcacttttaaagttcaatgcaacattaaatattgttttatcaata 39683870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 50768072 - 50768008
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||||||  |||||||| || |||||||||| ||||  ||||||||| |||||    
T  50768072 tcaagtttcaatgcaacattaattattgtcttgtcaataatacccttacatatttattgtagaga 50768008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 53125456 - 53125368
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||  | ||| | ||||| |||||||||||||  | |  ||||||||||||| ||| ||||| |||||||||| ||||    
T  53125456 tttgtttctatttaactttcactttcaaagttcaatgcaacattaaatgatgttttatcaatattacccttaattatttattgcggaga 53125368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 525
Target Start/End: Original strand, 28110130 - 28110222
Alignment:
Q  433 agaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    |||||||| |||||||   |||||| ||||| |||| ||||||||||||||  ||||||| |||||||||||||| ||||  |||||||||||    
T  28110130 agaaaaaacttgtttcacattacttgtcattttcaagtttcaatgcaacattaattattggtttatcaataatacccttacatatttattgca 28110222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 37284561 - 37284648
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||  ||||||| ||||| |||| |||||||||||||| |||||||| ||||||| |||||||||||  ||||||||| |||||    
T  37284561 tttgtttcactttacttgtcattttcaagtttcaatgcaacat-tattattgatttatcactaatactcttacctatttattgtagaga 37284648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 529
Target Start/End: Original strand, 39561959 - 39562021
Alignment:
Q  467 aaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||||||||||||||  ||||||| ||| |||||||||| ||||  ||||||||| |||||    
T  39561959 aaatttcaatgcaacattaattattggtttgtcaataatacccttacttatttattgtagaga 39562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 494
Target Start/End: Complemental strand, 6212463 - 6212402
Alignment:
Q  433 agaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgtt 494  Q
    |||||||| | ||||| ||||||||||| || ||||| |||||||||||||  |||||||||    
T  6212463 agaaaaaaatcgtttcaatttacttatcgttttcaaagttcaatgcaacattaattattgtt 6212402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 9369997 - 9370085
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||  | ||| | ||||| |||||||||| ||  | | |||||||||||||| ||| ||||| |||||||||| ||||    
T  9369997 tttgtttctatttaactgtcactttcaaagttcaatgcaatattaagtgttgttttatcaatattacccttaaatatttattgcggaga 9370085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 12969807 - 12969871
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||| ||  |||||||| || |||||||||| ||||| ||||||||| |||||    
T  12969807 tcaagtttcaatgcaatattaattattgtcttctcaataatacccttaaatatttattgtagaga 12969871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 522
Target Start/End: Original strand, 234305 - 234399
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttatt 522  Q
    ||||| || |||||| ||||| |||||||||| ||||| ||||| ||  |||||||||  |||| |||||| |||||||||||||||| ||||||||    
T  234305 cttttgtaaaaaaaaattgttcctatttacttgtcattttcaaagtt--atgcaacattaattactgttttgtcaataatactcttaaatatttatt 234399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 527
Target Start/End: Original strand, 2311830 - 2311870
Alignment:
Q  487 ttattgttttatcaataatactcttaagtatttattgcaga 527  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  2311830 ttattattttatcaataatactcttaagtatttattgcaga 2311870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 507
Target Start/End: Complemental strand, 6737318 - 6737258
Alignment:
Q  447 tctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatac 507  Q
    |||||||| |||||||| ||||| |||||||||| ||  ||||||||||||||||||||||    
T  6737318 tctatttatttatcattttcaaagttcaatgcaatattaattattgttttatcaataatac 6737258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 529
Target Start/End: Complemental strand, 18194449 - 18194346
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    |||||| |||||||||||||| |||||||  ||||||| |||||||||||||||| ||  | | |||||||| ||| | ||| ||||  ||||||||||     
T  18194449 cttttagagaaaaaatttgttcctatttaactatcattttcaaatttcaatgcaaaattaaatgttgttttaccaacattacccttatatatttattgcg 18194350  T
Q  526 gaga 529  Q
    ||||    
T  18194349 gaga 18194346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 529
Target Start/End: Original strand, 24283597 - 24283693
Alignment:
Q  433 agaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||||||||||| |||||||| | ||| | ||||| |||||||||||||  | |  ||||||||||||| ||| ||||  |||||||||| ||||    
T  24283597 agaaaaaatttgttcctatttacctgtcactttcaaagttcaatgcaacattaaatgatgttttatcaatattacccttagatatttattgcggaga 24283693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 3091747 - 3091659
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||  ||||||| ||||| | || ||||||||||||||  | ||||| ||| |||||||||| ||||  ||||||||| |||||    
T  3091747 tttgtttcactttacttgtcatttttaagtttcaatgcaacattaaatattggtttgtcaataatacccttacatatttattgtagaga 3091659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 529
Target Start/End: Complemental strand, 31815292 - 31815200
Alignment:
Q  437 aaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||||||  | | | | ||||| |||||||||||||  | |||||||||| ||||| ||| ||||  |||||||||| ||||    
T  31815292 aaaatttgtttctatttaactgttactttcaaaattcaatgcaacattaaatattgttttaccaatattacccttagatatttattgcggaga 31815200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 47652871 - 47652907
Alignment:
Q  493 ttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  47652871 ttttatccataatactcttaactatttattgcagaga 47652907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 18355911 - 18355999
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||  ||||||| ||| | |||| ||||||||||||||  ||||||| |||||||||||||| ||||  ||||||||| |||||    
T  18355911 tttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattgatttatcaataatacccttacttatttattgtagaga 18355999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 529
Target Start/End: Complemental strand, 43159998 - 43159895
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    |||||| |||||||| |||||| ||||||  | ||| | ||||| |||||||||||||  | | ||| |||||||||| ||| ||||| |||||||||||    
T  43159998 cttttagagaaaaaaattgtttttatttaactgtcactttcaaaattcaatgcaacattaaatgttgatttatcaatattacccttaaatatttattgca 43159899  T
Q  526 gaga 529  Q
    ||||    
T  43159898 gaga 43159895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 529
Target Start/End: Original strand, 32835044 - 32835120
Alignment:
Q  453 tacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||| ||||| |||| ||||||||||||||  | ||||||||| |||||||||| ||||| |||| |||| |||||    
T  32835044 tacttgtcattttcaagtttcaatgcaacattaagtattgttttgtcaataatacccttaaatattaattgtagaga 32835120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 53559654 - 53559742
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||||||| |||||||| ||| | |||| ||||||||||||||  || |||| ||||| ||||||||| |||  ||||||||| |||||    
T  53559654 tttgtttcaatttacttgtcactctcaagtttcaatgcaacattaatcattgatttattaataatactgttacttatttattgtagaga 53559742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 491
Target Start/End: Complemental strand, 26972174 - 26972119
Alignment:
Q  436 aaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattatt 491  Q
    ||||||||||| |||||||||| ||||| ||||| |||||||||| | ||||||||    
T  26972174 aaaaatttgttcctatttacttctcattttcaaagttcaatgcaatacatattatt 26972119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 529
Target Start/End: Complemental strand, 199071 - 199001
Alignment:
Q  459 tcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||| |||| ||||||||||||||  ||||||||||| |||||||||| |||   ||||||||| |||||    
T  199071 tcattttcaagtttcaatgcaacattaattattgttttgtcaataatacccttgcatatttattgtagaga 199001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 20848957 - 20848871
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactctta 512  Q
    |||||| |||||||||||||| |||||||  | ||| | ||||| |||||||||||||  | | |||||||| ||||| ||||||||    
T  20848957 cttttagagaaaaaatttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattactctta 20848871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 3383286 - 3383222
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||||||  |||||||| || ||||||||||||||   ||||||||| |||||    
T  3383286 tcaagtttcaatgcaacattaattattgtcttgtcaataatactcttgcatatttattgtagaga 3383222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 13703422 - 13703358
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    |||| ||||||||||||||  |||||||| || |||||||||| |||   |||||||||||||||    
T  13703422 tcaagtttcaatgcaacattaattattgtgttgtcaataatacccttgcatatttattgcagaga 13703358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 529
Target Start/End: Original strand, 323 - 426
Alignment:
Q  426 cttttatagaaaaaatttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgca 525  Q
    |||||| |||||||||||||| ||||||| || ||| | ||||| |||||||||||||  | | |||||||| ||| | |||| |||  |||||||||||    
T  323 cttttagagaaaaaatttgttactatttaattgtcactttcaaagttcaatgcaacattaaatgttgttttaccaaaattacttttagatatttattgca 422  T
Q  526 gaga 529  Q
    ||||    
T  423 gaga 426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 45663 - 45605
Alignment:
Q  465 tcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattg 523  Q
    |||||||||||||||| ||  |||||||| ||||||||||||  ||||| |||||||||    
T  45663 tcaaatttcaatgcaatattaattattgtattatcaataataaccttaaatatttattg 45605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 8177 - 8265
Alignment:
Q  441 tttgtttctatttacttatcattatcaaatttcaatgcaacatatattattgttttatcaataatactcttaagtatttattgcagaga 529  Q
    ||||||||||||||  | ||||| ||||| |||||||||||||  | | |||||||| ||||| |  |||||  |||||||||||||||    
T  8177 tttgtttctatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttaccaatattcttcttagttatttattgcagaga 8265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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