View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16832_high_6 (Length: 509)

Name: NF16832_high_6
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16832_high_6
NF16832_high_6
[»] chr5 (15 HSPs)
chr5 (1-491)||(17581077-17581568)
chr5 (393-444)||(17762127-17762178)
chr5 (390-446)||(21117576-21117632)
chr5 (397-444)||(17694058-17694105)
chr5 (398-443)||(17686961-17687006)
chr5 (390-443)||(22554775-22554828)
chr5 (399-444)||(26657405-26657450)
chr5 (399-444)||(26928993-26929038)
chr5 (390-449)||(40373982-40374039)
chr5 (392-484)||(41405403-41405494)
chr5 (401-444)||(26657901-26657944)
chr5 (401-444)||(26929489-26929532)
chr5 (397-451)||(24652558-24652612)
chr5 (390-444)||(37447743-37447797)
chr5 (399-444)||(41912644-41912689)
[»] chr1 (14 HSPs)
chr1 (390-468)||(3592643-3592721)
chr1 (391-452)||(39157543-39157604)
chr1 (390-481)||(29701695-29701786)
chr1 (394-444)||(11564492-11564542)
chr1 (390-444)||(32034942-32034996)
chr1 (390-452)||(46022959-46023021)
chr1 (390-452)||(48994874-48994936)
chr1 (413-473)||(8274659-8274719)
chr1 (390-473)||(15913273-15913356)
chr1 (390-444)||(34385270-34385324)
chr1 (394-444)||(34903488-34903538)
chr1 (390-444)||(43761349-43761403)
chr1 (394-442)||(39313081-39313129)
chr1 (393-449)||(48994699-48994755)
[»] chr2 (7 HSPs)
chr2 (392-473)||(41377913-41377994)
chr2 (406-462)||(18867666-18867722)
chr2 (390-449)||(24450617-24450676)
chr2 (390-452)||(630185-630247)
chr2 (399-441)||(24451383-24451425)
chr2 (390-444)||(30930239-30930293)
chr2 (394-430)||(13773607-13773643)
[»] chr6 (17 HSPs)
chr6 (390-450)||(15555144-15555203)
chr6 (394-451)||(26591891-26591948)
chr6 (392-452)||(4979921-4979981)
chr6 (390-450)||(15554448-15554508)
chr6 (390-444)||(2999483-2999537)
chr6 (390-436)||(31794943-31794989)
chr6 (390-422)||(5089666-5089698)
chr6 (400-452)||(14908926-14908978)
chr6 (393-444)||(15555326-15555377)
chr6 (390-444)||(11959868-11959922)
chr6 (394-444)||(12261807-12261857)
chr6 (390-444)||(15555473-15555527)
chr6 (407-452)||(12262161-12262206)
chr6 (394-451)||(14910403-14910460)
chr6 (396-444)||(12261970-12262018)
chr6 (390-442)||(15555654-15555706)
chr6 (389-449)||(15556482-15556542)
[»] chr4 (17 HSPs)
chr4 (395-442)||(8179522-8179569)
chr4 (390-452)||(38626257-38626319)
chr4 (394-452)||(34852831-34852889)
chr4 (392-441)||(11132680-11132729)
chr4 (395-444)||(25051389-25051438)
chr4 (390-451)||(25446937-25446998)
chr4 (390-451)||(36297683-36297744)
chr4 (390-446)||(11132282-11132338)
chr4 (390-441)||(37996665-37996716)
chr4 (401-451)||(11132110-11132160)
chr4 (390-440)||(13540455-13540505)
chr4 (390-443)||(2475090-2475143)
chr4 (405-446)||(16177450-16177491)
chr4 (389-442)||(32668852-32668905)
chr4 (395-451)||(13541996-13542052)
chr4 (390-418)||(19585345-19585373)
chr4 (399-451)||(31916432-31916484)
[»] chr7 (26 HSPs)
chr7 (390-452)||(2739798-2739860)
chr7 (390-441)||(25480480-25480531)
chr7 (395-441)||(18869548-18869594)
chr7 (390-444)||(28644944-28644998)
chr7 (390-444)||(33536672-33536726)
chr7 (390-452)||(42586197-42586259)
chr7 (390-444)||(24865206-24865260)
chr7 (390-452)||(44603934-44603996)
chr7 (390-451)||(21665681-21665742)
chr7 (391-452)||(23136959-23137020)
chr7 (390-451)||(24719028-24719089)
chr7 (390-430)||(14649729-14649769)
chr7 (392-444)||(23137358-23137410)
chr7 (392-444)||(33536856-33536908)
chr7 (395-442)||(8237840-8237887)
chr7 (393-444)||(35144404-35144455)
chr7 (390-444)||(8669740-8669794)
chr7 (390-444)||(8669879-8669933)
chr7 (390-440)||(9669431-9669481)
chr7 (390-444)||(21666076-21666130)
chr7 (394-452)||(29529797-29529854)
chr7 (402-443)||(14658143-14658184)
chr7 (407-452)||(28644762-28644807)
chr7 (394-451)||(28645101-28645158)
chr7 (393-438)||(44403250-44403295)
chr7 (395-451)||(9677052-9677108)
[»] chr3 (20 HSPs)
chr3 (397-473)||(35845493-35845569)
chr3 (390-452)||(1102322-1102384)
chr3 (395-449)||(50089691-50089745)
chr3 (394-443)||(25810434-25810483)
chr3 (395-478)||(20106033-20106115)
chr3 (390-444)||(27532319-27532373)
chr3 (392-444)||(13698270-13698323)
chr3 (390-443)||(20126201-20126254)
chr3 (396-449)||(31721211-31721264)
chr3 (397-449)||(12946677-12946728)
chr3 (390-452)||(3085609-3085669)
chr3 (402-449)||(3142155-3142202)
chr3 (390-449)||(4160742-4160801)
chr3 (399-449)||(4144763-4144813)
chr3 (412-482)||(7165352-7165422)
chr3 (390-444)||(12946500-12946554)
chr3 (390-444)||(27532100-27532154)
chr3 (392-441)||(28872107-28872155)
chr3 (408-452)||(1101749-1101793)
chr3 (392-444)||(19880017-19880068)
[»] chr8 (10 HSPs)
chr8 (390-452)||(27673276-27673338)
chr8 (395-444)||(36648070-36648119)
chr8 (390-444)||(24909865-24909919)
chr8 (392-429)||(27746707-27746744)
chr8 (393-441)||(13699131-13699179)
chr8 (394-452)||(28972012-28972070)
chr8 (395-473)||(40240218-40240296)
chr8 (395-444)||(3739232-3739281)
chr8 (395-444)||(42498984-42499033)
chr8 (390-450)||(28972197-28972257)
[»] scaffold1609 (3 HSPs)
scaffold1609 (390-444)||(436-490)
scaffold1609 (390-481)||(265-355)
scaffold1609 (390-444)||(615-669)
[»] scaffold0636 (1 HSPs)
scaffold0636 (395-451)||(1294-1350)
[»] scaffold0013 (1 HSPs)
scaffold0013 (389-452)||(50962-51025)


Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 17581568 - 17581077
Alignment:
Q  1 cgaagaaggactggtggttgaggtctcacttcggtttgccttccacactacgaataaccaagctgggtatgaagccgtcatagttgggctaacattagca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  17581568 cgaagaaggactggtggttgaggtctcacttcggtttgccttccacactatgaataaccaagctgggtatgaagctgtcatagtttggctaacattagca 17581469  T
Q  101 gccggcctgatggcttagaaagtcaaacattacataaatttccaattggtcgtgtgacaagtaatgagggaggcctaggtcaaggaaccattcttataga 200  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17581468 gccggcctgatggctcagaaagttaaacattacataaatttccaattggtcgtgtgacaagtaaagagggaggcctaggtcaaggaaccattcttataga 17581369  T
Q  201 aatacctcacggaggtccaagagaaactcgtcaagtttcgggctttttaaataatacatatccctcaagagaaaaatacaaggacagacgacgttctatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17581368 aatacctcacggaggtccaagagaaactcgtcaagtttcgggctttttaaataatacatatccctcaagagaaaaatacaaggacagacgacgttctatc 17581269  T
Q  301 aaagttggcaatcacaagatcatcgggggtcaaccacttcttaatacatgagactctcaacagacctagttaccacactcctgtctttaactacattaat 400  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17581268 aaagttggcaatcacaagatcattgggggtcaaccacttcttaatacatgagactctcaacagacctagttaccacactcctgt-tttaactacattaat 17581170  T
Q  401 gttg--atattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaactttcttccacggtaata 491  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17581169 gttgatatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaacttttttccacggtaata 17581077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 17762127 - 17762178
Alignment:
Q  393 acattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||||||    
T  17762127 acattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcat 17762178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 21117576 - 21117632
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcattt 446  Q
    |||||||| |||||||||||||||||||| ||   ||||||||||||||||||||||    
T  21117576 actacattgatgttgatattttgaaaatagtcgtgagtttttaaaattttatcattt 21117632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 444
Target Start/End: Original strand, 17694058 - 17694105
Alignment:
Q  397 taatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||    
T  17694058 taatgttgatattttaaaaataattacgagtttttaaaattttatcat 17694105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 17686961 - 17687006
Alignment:
Q  398 aatgttgatattttgaaaataatcacaagtttttaaaattttatca 443  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||    
T  17686961 aatgttgatattttaaaaattatcacaagttttcaaaattttatca 17687006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 22554775 - 22554828
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatca 443  Q
    |||||||||||||||||||||| |||||| |||| |||||  ||||||||||||    
T  22554775 actacattaatgttgatattttaaaaatagtcacgagtttccaaaattttatca 22554828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 26657405 - 26657450
Alignment:
Q  399 atgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||    
T  26657405 atgttgatattttgaaaatagtcacgagtttttcaaattttatcat 26657450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 26928993 - 26929038
Alignment:
Q  399 atgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||    
T  26928993 atgttgatattttgaaaatagtcacgagtttttcaaattttatcat 26929038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 40373982 - 40374039
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    ||||||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||    
T  40373982 actacattaatgttgattttttgaaaataatcata--gttttaaaattttatcatatcga 40374039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 484
Target Start/End: Original strand, 41405403 - 41405494
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaactttcttccac 484  Q
    |||| |||||| |||||||  |||||| ||||||||||| ||||||||||||| ||||| |  | ||||   |||||||||||||||||||||    
T  41405403 tacactaatgtagatattta-aaaatagtcacaagttttcaaaattttatcatatcgacctttttatattggtacataaaaactttcttccac 41405494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 26657901 - 26657944
Alignment:
Q  401 gttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||    
T  26657901 gttgatattttgaaaatagtcataagtttataaaattttatcat 26657944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 26929489 - 26929532
Alignment:
Q  401 gttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||    
T  26929489 gttgatattttgaaaatagtcataagtttataaaattttatcat 26929532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 24652612 - 24652558
Alignment:
Q  397 taatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    ||||||||||||||| |||||| |||||| |||| |||| |||||||| ||||||    
T  24652612 taatgttgatattttaaaaatagtcacaaattttaaaaaatttatcatatcgact 24652558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 37447797 - 37447743
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||||||||||||||||||||  |||  ||| || |||||||||||||    
T  37447797 actacattaatgttgatattttgaaaatggtcatgagtgttcaaaattttatcat 37447743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 41912644 - 41912689
Alignment:
Q  399 atgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||| |||||||||  |||||||||| |||||||||    
T  41912644 atgttgatattttggaaataatcatgagtttttaaatttttatcat 41912689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 468
Target Start/End: Original strand, 3592643 - 3592721
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacat 468  Q
    |||||||||||||| |||||||||||||| |||| |||||| ||||||||||||| |||||||  | ||||||||||||    
T  3592643 actacattaatgttaatattttgaaaatagtcacgagttttcaaaattttatcatatcgactttctcatatcaatacat 3592721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 39157543 - 39157604
Alignment:
Q  391 ctacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||| ||||||||||||||||| | | ||||||| ||||||||||||| |||||||    
T  39157543 ctacattaattttgatattttgaaaatagttataagttttcaaaattttatcatatcgactt 39157604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 481
Target Start/End: Original strand, 29701695 - 29701786
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaactttcttc 481  Q
    ||||||||||| |||||||||| |||||| |||| | |||| ||||||||||||| ||||||     |||||| |||||||||| |||||||    
T  29701695 actacattaatattgatattttaaaaatagtcacgatttttcaaaattttatcatatcgactatcacatatcagtacataaaaattttcttc 29701786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 11564542 - 11564492
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||||||||||||||||| ||||  ||||| |||||||||||||    
T  11564542 cattaatgttgatattttgaaaatagtcacttgttttcaaaattttatcat 11564492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 32034996 - 32034942
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||| |||||||||| |||||| |||| |||||| |||||||||||||    
T  32034996 actacattaattttgatattttaaaaatagtcacgagttttcaaaattttatcat 32034942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 46022959 - 46023021
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||||||||||| |||||||||| |||| |||||  | ||||||||||| |||||||    
T  46022959 actacattaatgttgataatttgaaaatagtcacgagtttccacaattttatcatatcgactt 46023021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 48994936 - 48994874
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||||||||||| |||||||||| |||| |||||  | ||||||||||| |||||||    
T  48994936 actacattaatgttgataatttgaaaatagtcacgagtttcaacaattttatcatatcgactt 48994874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 8274659 - 8274719
Alignment:
Q  413 aaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaa 473  Q
    |||||||||||||||||| ||||||||||||| |||||||  | |||||  ||||||||||    
T  8274659 aaaataatcacaagttttgaaaattttatcatatcgactttctcatatcggtacataaaaa 8274719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 15913356 - 15913273
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaa 473  Q
    |||| ||||||||||||||||||||| ||||    |||||||||||||||||||| || | ||  | |||||| ||||||||||    
T  15913356 actatattaatgttgatattttgaaagtaattttgagtttttaaaattttatcatatcaattttctcatatcagtacataaaaa 15913273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 34385324 - 34385270
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||| ||||||||| ||||||||||||| |||| ||||||| |||||| |||||    
T  34385324 actacgttaatgttggtattttgaaaatattcacgagtttttgaaatttcatcat 34385270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 34903488 - 34903538
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||||||||||||||||  | || | ||||||||||||||||||    
T  34903488 cattaatgttgatattttgaaaatggttacgattttttaaaattttatcat 34903538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 43761403 - 43761349
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||| |||||||||||||||||||| | |  ||||| ||||||||||||||    
T  43761403 actacattgatgttgatattttgaaaatagttatgagtttctaaaattttatcat 43761349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 39313129 - 39313081
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatc 442  Q
    ||||||| ||||||||||||||||| | || |||||| |||||||||||    
T  39313129 cattaatcttgatattttgaaaatagttacgagttttcaaaattttatc 39313081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 48994755 - 48994699
Alignment:
Q  393 acattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    ||||| ||||| ||||||||||||||||||  |||||| || |||||||||| ||||    
T  48994755 acattgatgtttatattttgaaaataatcatgagttttcaatattttatcatatcga 48994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 392 - 473
Target Start/End: Original strand, 41377913 - 41377994
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaa 473  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||||||  |||||||  | |||| ||||||||||||    
T  41377913 tacattaatgttgatattttgaaaataaacatgagtttttaaaattttatcaaatcgacttcttcatatgaatacataaaaa 41377994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 18867666 - 18867722
Alignment:
Q  406 tattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatca 462  Q
    ||||||||||||| |||| |||||| ||||||||||||| ||||||| |||||||||    
T  18867666 tattttgaaaatattcacgagttttcaaaattttatcatatcgactttgtgatatca 18867722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 24450617 - 24450676
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    |||||||| ||||||||||||| |||||| |||  |||||| ||||||||||||| ||||    
T  24450617 actacattgatgttgatattttaaaaatagtcatgagttttcaaaattttatcatatcga 24450676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 630185 - 630247
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||| ||||||||||||| |||||||||| |||| ||||| || | ||||||||| |||||||    
T  630185 actatattaatgttgataatttgaaaatagtcacgagtttctacacttttatcatatcgactt 630247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 24451383 - 24451425
Alignment:
Q  399 atgttgatattttgaaaataatcacaagtttttaaaattttat 441  Q
    ||||||||||||||||||||||||  |||||| ||||||||||    
T  24451383 atgttgatattttgaaaataatcatgagttttaaaaattttat 24451425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 30930239 - 30930293
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||| ||||||||||||||||| |||||| ||||||||||| | | |||||||||    
T  30930239 actatattaatgttgatattttaaaaatagtcacaagttttcatagttttatcat 30930293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 13773607 - 13773643
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttt 430  Q
    |||||||||||||||||| |||||||| |||||||||    
T  13773607 cattaatgttgatattttaaaaataattacaagtttt 13773643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 15555144 - 15555203
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgac 450  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  15555144 actacattaatgttgatattttgaaaatagtcacaag-ttttaaaattttatcatatcgac 15555203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 26591891 - 26591948
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  26591891 cattaatgttaatattttgaaaatagtcacaagttttcaaaattttatcatatcgact 26591948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 452
Target Start/End: Original strand, 4979921 - 4979981
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||| ||||||||||||||| |||| |||||| ||||| ||||||| |||||||    
T  4979921 tacattaatgtcgatattttgaaaatagtcacgagttttcaaaatattatcatatcgactt 4979981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 15554448 - 15554508
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgac 450  Q
    |||| ||||||||||||||||||||||| ||||  |||||||||||||||| ||| |||||    
T  15554448 actatattaatgttgatattttgaaaatgatcatgagtttttaaaattttaacatatcgac 15554508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 2999483 - 2999537
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||| |||||||||||||||||||| |||  | ||||||||||||||||||    
T  2999483 actacattgatgttgatattttgaaaatagtcatgactttttaaaattttatcat 2999537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 31794989 - 31794943
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaat 436  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  31794989 actacattaatgttgatatattgaaaatagtcacgagtttttaaaat 31794943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 5089666 - 5089698
Alignment:
Q  390 actacattaatgttgatattttgaaaataatca 422  Q
    |||||||||||||||||||||||||||||||||    
T  5089666 actacattaatgttgatattttgaaaataatca 5089698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 14908978 - 14908926
Alignment:
Q  400 tgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||||||||||| |||  ||||| |||||||||||||| |||||||    
T  14908978 tgttgatattttgaaaatagtcatgagtttctaaaattttatcatatcgactt 14908926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 15555326 - 15555377
Alignment:
Q  393 acattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||| ||||||||||||||||| |||  |||||| |||||||||||||    
T  15555326 acattaatattgatattttgaaaatagtcatgagttttgaaaattttatcat 15555377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 11959922 - 11959868
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||||||| |||||||| |  |||||| |||| ||||||||    
T  11959922 actacattaatgttgatattttaaaaataataatgagttttcaaaaatttatcat 11959868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 12261807 - 12261857
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||| |||||||||| |||| |||||| |||| ||||||||    
T  12261807 cattaatgttgatactttgaaaatagtcacgagttttaaaaaatttatcat 12261857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 15555473 - 15555527
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||| |||||||||||||||||||||||||||   | |||| |||||||||||||    
T  15555473 actatattaatgttgatattttgaaaataatctagatttttcaaaattttatcat 15555527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 12262161 - 12262206
Alignment:
Q  407 attttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||||| |||  |||||||||||||||||||| |||||||    
T  12262161 attttgaaaatagtcattagtttttaaaattttatcatatcgactt 12262206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 14910460 - 14910403
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    |||||||||||||| ||| |||||| |||  |||||| ||||||||||||| ||||||    
T  14910460 cattaatgttgataatttaaaaatagtcatgagttttcaaaattttatcatatcgact 14910403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 12261970 - 12262018
Alignment:
Q  396 ttaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||||||||||||||| |||  |||||| |||||| ||||||    
T  12261970 ttaatgttgatattttgaaaatagtcattagttttcaaaattctatcat 12262018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 15555654 - 15555706
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatc 442  Q
    ||||||||||||||||||||||  ||||  |||  ||||||||||||||||||    
T  15555654 actacattaatgttgatattttataaattgtcatgagtttttaaaattttatc 15555706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 15556482 - 15556542
Alignment:
Q  389 aactacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    |||||||||||||||||||| || |||| |||||  |||||| |||| |||||||| ||||    
T  15556482 aactacattaatgttgatatgttaaaaacaatcatgagttttaaaaaatttatcatatcga 15556542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 8179569 - 8179522
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatc 442  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8179569 attaatgttgatattttgaaaataatcacaaatttttaaaattttatc 8179522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 38626257 - 38626319
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||||||||||||||  |||||| |||| ||||| |||||||||||||| |||||||    
T  38626257 actacattaatgttgatatttgaaaaatagtcacgagtttataaaattttatcatatcgactt 38626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 34852831 - 34852889
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||||||||||||||||||| ||  | ||| |||||||||||||| |||||||    
T  34852831 cattaatgttgatattttgaaaataaccatgaatttctaaaattttatcatatcgactt 34852889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 11132680 - 11132729
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttat 441  Q
    |||||| |||||||||||||||||||| |||| |||||| ||||||||||    
T  11132680 tacattgatgttgatattttgaaaatagtcacgagttttcaaaattttat 11132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 25051389 - 25051438
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  25051389 attaatgttgatattttaaaaataatcatgagttttcaaaattttatcat 25051438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 25446998 - 25446937
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    |||| ||| ||||||||||||| ||||||||||  ||||| |||||||||||||| ||||||    
T  25446998 actatatttatgttgatattttaaaaataatcatgagtttctaaaattttatcatatcgact 25446937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 36297683 - 36297744
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    ||||||||||  ||||||||||||||| |||||   ||||||||||||||||||| ||||||    
T  36297683 actacattaactttgatattttgaaaacaatcatgtgtttttaaaattttatcatatcgact 36297744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 11132282 - 11132338
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcattt 446  Q
    ||||| || |||||||||||||||||||| |||  |||||| |||||||||||||||    
T  11132282 actaccttgatgttgatattttgaaaatagtcatgagttttcaaaattttatcattt 11132338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 37996716 - 37996665
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttat 441  Q
    |||||||||||||||||||||| |||||| |||  |||||| ||||||||||    
T  37996716 actacattaatgttgatattttaaaaatagtcatgagttttcaaaattttat 37996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 11132110 - 11132160
Alignment:
Q  401 gttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    |||||||||||||||||  |||| ||||||| |||||||||||| ||||||    
T  11132110 gttgatattttgaaaatggtcaccagtttttcaaattttatcatatcgact 11132160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 13540505 - 13540455
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaatttta 440  Q
    ||||||| ||| ||||||||||||||||| |||  ||||||||||||||||    
T  13540505 actacataaattttgatattttgaaaatagtcatgagtttttaaaatttta 13540455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 2475143 - 2475090
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatca 443  Q
    |||||||||| ||||||||||| |||||| |||  |||||| ||||||||||||    
T  2475143 actacattaaggttgatattttaaaaatattcatgagttttcaaaattttatca 2475090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 16177491 - 16177450
Alignment:
Q  405 atattttgaaaataatcacaagtttttaaaattttatcattt 446  Q
    |||||||||||||| ||| |||||| ||||||||||||||||    
T  16177491 atattttgaaaatagtcataagtttctaaaattttatcattt 16177450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 32668852 - 32668905
Alignment:
Q  389 aactacattaatgttgatattttgaaaataatcacaagtttttaaaattttatc 442  Q
    ||||||||||||||||| |||||||||||| |||  |||||| ||||| |||||    
T  32668852 aactacattaatgttgaaattttgaaaatagtcaatagttttcaaaatgttatc 32668905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 13542052 - 13541996
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    ||||||||||||||||| |||||| | |  || ||||||||||||||||| ||||||    
T  13542052 attaatgttgatatttttaaaatagttattaggttttaaaattttatcatctcgact 13541996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 418
Target Start/End: Original strand, 19585345 - 19585373
Alignment:
Q  390 actacattaatgttgatattttgaaaata 418  Q
    |||||||||||||||||||||||||||||    
T  19585345 actacattaatgttgatattttgaaaata 19585373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 31916432 - 31916484
Alignment:
Q  399 atgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    |||||||||||||||||||| |||| ||||||  ||||||| |||| ||||||    
T  31916432 atgttgatattttgaaaatagtcacgagttttccaaattttttcatatcgact 31916484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 2739860 - 2739798
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||| |||||||    
T  2739860 actacattaatgttgatattttgaaaatagtcataagttttcaaaatgttatcatatcgactt 2739798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 25480531 - 25480480
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttat 441  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  25480531 actacattaatgttgatattttaaaaataatcatgagtttttaaaattttat 25480480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 18869548 - 18869594
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttat 441  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  18869548 attaatgttgatattttgaaaataatcacgagttttcaaaattttat 18869594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 28644998 - 28644944
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||| |||||||||||||| |||| ||||| ||||||||||||||    
T  28644998 actacattaatgttaatattttgaaaatagtcacgagtttctaaaattttatcat 28644944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 33536726 - 33536672
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||| |||||||||||||||||||||||| |||| |||||| |||||||||||||    
T  33536726 actatattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcat 33536672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 42586259 - 42586197
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||| ||||||||||||||||||||||||| |||||  |||||||||| || |||||||    
T  42586259 actacattgatgttgatattttgaaaataatcacgagtttccaaaattttattatatcgactt 42586197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 24865260 - 24865206
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||| ||||||||||||||||| |||  | ||||||||||||||||||    
T  24865260 actacattaattttgatattttgaaaatagtcatgaatttttaaaattttatcat 24865206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 44603934 - 44603996
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||| ||||||||||||||||| |||||| |||| | |||| ||||||||||||| |||||||    
T  44603934 actaaattaatgttgatatttttaaaatagtcacgatttttcaaaattttatcatctcgactt 44603996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 21665681 - 21665742
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    |||| ||| ||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||    
T  21665681 actatatttatgttgatattttaaaaatagtcacgagtttttaaaagtttatcatatcgact 21665742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 23136959 - 23137020
Alignment:
Q  391 ctacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||||||||||||||||| ||||||  || ||| |||||||||| || |||||||    
T  23136959 ctacattaatgttgatattttgaaagtaatcatgagatttcaaaattttataatatcgactt 23137020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 24719028 - 24719089
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    ||||| |||||||||||||||| |||||| ||| || |||| ||||||||||||| ||||||    
T  24719028 actacgttaatgttgatattttaaaaatactcataaattttcaaaattttatcatatcgact 24719089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 430
Target Start/End: Complemental strand, 14649769 - 14649729
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttt 430  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  14649769 actacactaatgttgatattttaaaaataatcacaagtttt 14649729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 23137358 - 23137410
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||| ||||||||| |||||| ||| || ||||||||||||||||||    
T  23137358 tacattaatgctgatattttaaaaatagtcataaatttttaaaattttatcat 23137410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 33536908 - 33536856
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||| |||||||||||||||||||| ||||  ||||| |||||||||||||    
T  33536908 tacattcatgttgatattttgaaaatagtcacgtgttttcaaaattttatcat 33536856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 8237887 - 8237840
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatc 442  Q
    |||||||||||||||||||||||| |||  |||||| |||||||||||    
T  8237887 attaatgttgatattttgaaaatagtcatgagttttcaaaattttatc 8237840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 35144404 - 35144455
Alignment:
Q  393 acattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||| |||||||||||||| ||||||||||  | ||||||||||||||||||    
T  35144404 acatgaatgttgatattttaaaaataatcatgaatttttaaaattttatcat 35144455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 8669794 - 8669740
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||| |||||||||||| | || | |||||| |||||||||||||    
T  8669794 actacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcat 8669740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 8669933 - 8669879
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||| |||||||||||| | || | |||||| |||||||||||||    
T  8669933 actacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcat 8669879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 9669481 - 9669431
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaatttta 440  Q
    ||||||| ||| ||||||||||||||||| |||  ||||||||||||||||    
T  9669481 actacataaattttgatattttgaaaatagtcatgagtttttaaaatttta 9669431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 21666076 - 21666130
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||| ||| |||||||||||||| |||  |||||| |||||||||||||    
T  21666076 actacattaaggtttatattttgaaaatagtcatgagttttcaaaattttatcat 21666130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 29529854 - 29529797
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||||| ||||||||||| | || |||||| ||||||||||||| |||||||    
T  29529854 cattaatgttgat-ttttgaaaatagtaacgagttttcaaaattttatcatatcgactt 29529797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 14658184 - 14658143
Alignment:
Q  402 ttgatattttgaaaataatcacaagtttttaaaattttatca 443  Q
    |||||||||| ||||| |||||||||||| ||||||||||||    
T  14658184 ttgatattttaaaaattatcacaagttttcaaaattttatca 14658143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 28644807 - 28644762
Alignment:
Q  407 attttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||||||||  |||||| ||||||||||||| |||||||    
T  28644807 attttgaaaataatcaggagttttcaaaattttatcatatcgactt 28644762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 28645158 - 28645101
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    |||||||||| ||||||| |||| | |||| |||||| ||||||||||||| ||||||    
T  28645158 cattaatgttaatattttaaaaagagtcacgagttttcaaaattttatcatatcgact 28645101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 44403295 - 44403250
Alignment:
Q  393 acattaatgttgatattttgaaaataatcacaagtttttaaaattt 438  Q
    |||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  44403295 acattaatgttggtatttggaaaatactcacgagtttttaaaattt 44403250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 9677108 - 9677052
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    ||||||||||||||||| |||||| | |  || ||||||||||||||||| ||||||    
T  9677108 attaatgttgatatttttaaaatagttattaggttttaaaattttatcatctcgact 9677052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 473
Target Start/End: Complemental strand, 35845569 - 35845493
Alignment:
Q  397 taatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaa 473  Q
    |||| ||||||||||||||||||||  || |||||||||||||||||| |||||||  | |||||| ||||||||||    
T  35845569 taatattgatattttgaaaataatcgtaaatttttaaaattttatcatatcgactttcttatatcagtacataaaaa 35845493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 1102384 - 1102322
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||||||||||||||||||||| | |  ||||| |||||||||||||| |||||||    
T  1102384 actacattaatgttgatattttgaaaatagttatgagtttctaaaattttatcatatcgactt 1102322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 50089745 - 50089691
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    |||||||||||||||||||||| |||||| |||||| || |||||||||||||||    
T  50089745 attaatgttgatattttgaaaacaatcacgagttttcaagattttatcatttcga 50089691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 25810434 - 25810483
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatca 443  Q
    ||||||||||||||||||||||||| | || |||||||||||||||||||    
T  25810434 cattaatgttgatattttgaaaatagtaacgagtttttaaaattttatca 25810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 478
Target Start/End: Original strand, 20106033 - 20106115
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaactttc 478  Q
    ||||||||||||||||||||| || ||| ||||||| ||||||||||||| |||||||  | |||||  |||||||||| ||||    
T  20106033 attaatgttgatattttgaaa-tagtcataagttttcaaaattttatcatatcgactttctaatatcggtacataaaaaatttc 20106115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 27532319 - 27532373
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||| ||||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  27532319 actatattaatgttgatattttaaaaataatcatgagttttcaaaattttatcat 27532373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 13698270 - 13698323
Alignment:
Q  392 tacattaatgttgatatttt-gaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||||| |||||    
T  13698270 tacattaatgttgatatttttgaaaatagtcacgagtttttaaaatttgatcat 13698323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 20126254 - 20126201
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatca 443  Q
    |||||||| |||||||||||||||||||| |||  | |||||||||||||||||    
T  20126254 actacattgatgttgatattttgaaaatagtcatgaatttttaaaattttatca 20126201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 449
Target Start/End: Complemental strand, 31721264 - 31721211
Alignment:
Q  396 ttaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    ||||||| |||||||||||||||||||| ||||||  |||||||||||| ||||    
T  31721264 ttaatgtcgatattttgaaaataatcacgagttttctaaattttatcatatcga 31721211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 12946728 - 12946677
Alignment:
Q  397 taatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    |||||||||||||||||||||| ||||||| |||| |||||||||||| ||||    
T  12946728 taatgttgatattttgaaaatagtcacaag-ttttcaaattttatcatatcga 12946677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 3085669 - 3085609
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||| ||||| |||||  |||||||||||| ||||||||| |||||||||| |||||||    
T  3085669 actacattgatgtttatatt--gaaaataatcacgagtttttaatattttatcatatcgactt 3085609  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 449
Target Start/End: Complemental strand, 3142202 - 3142155
Alignment:
Q  402 ttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    ||||||||||||||||| |||| |||||| ||||||||||||| ||||    
T  3142202 ttgatattttgaaaatagtcacgagttttcaaaattttatcatatcga 3142155  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 4160801 - 4160742
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    |||||||| ||||||||||||| |||||| |||  ||||| |||||||||||||| ||||    
T  4160801 actacattgatgttgatatttttaaaatagtcaatagtttctaaaattttatcatatcga 4160742  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 4144813 - 4144763
Alignment:
Q  399 atgttgatattttgaaaataatcacaagtttttaaaattttatcatttcga 449  Q
    |||||||||||||||||||| |||  ||||| |||||||||||||| ||||    
T  4144813 atgttgatattttgaaaatagtcaatagtttctaaaattttatcatatcga 4144763  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 482
Target Start/End: Original strand, 7165352 - 7165422
Alignment:
Q  412 gaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaactttcttcc 482  Q
    |||||||||||| |||||| ||||||||||||| |||||||  | |||||  ||||| |||| ||||||||    
T  7165352 gaaaataatcacgagttttgaaaattttatcatatcgactttctcatatcggtacatgaaaattttcttcc 7165422  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 12946554 - 12946500
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||| |||| ||||||||||||||||||| |   |||||||||||||||||||    
T  12946554 actacaataattttgatattttgaaaataataatgtgtttttaaaattttatcat 12946500  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 27532100 - 27532154
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||| |||||||| ||||| || ||||||||||| | |||||||||||    
T  27532100 actacattaatattgatattctgaaactagtcacaagttttcagaattttatcat 27532154  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 28872155 - 28872107
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttat 441  Q
    ||||||||||||||| |||||||||||||||  | |||||||||||||||    
T  28872155 tacattaatgttgatgttttgaaaataatcatga-tttttaaaattttat 28872107  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 1101793 - 1101749
Alignment:
Q  408 ttttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||| |||| | |||||||||||||||||| |||||||    
T  1101793 ttttgaaaatagtcacgaatttttaaaattttatcatatcgactt 1101749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 19880068 - 19880017
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||| ||||||||||||||||| ||| ||| |||| ||||||||||||    
T  19880068 tacattaatattgatattttgaaaatagtcataag-ttttcaaattttatcat 19880017  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 27673276 - 27673338
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    ||||||||||| |||||||||| |||||| |||  |||||||||||||||||||| |||||||    
T  27673276 actacattaattttgatattttaaaaatagtcatgagtttttaaaattttatcatatcgactt 27673338  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 36648119 - 36648070
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  36648119 attaatgttgatattttgaaaatagtcgtaagtttttaaaattttatcat 36648070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 24909919 - 24909865
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||| |||||||||||||| |||||| ||| |||||||||| ||||||||||    
T  24909919 actacatcaatgttgatattttaaaaatagtcataagtttttaatattttatcat 24909865  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 27746744 - 27746707
Alignment:
Q  392 tacattaatgttgatattttgaaaataatcacaagttt 429  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  27746744 tacattaatgttgatattttgaaaatagtcacaagttt 27746707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 13699179 - 13699131
Alignment:
Q  393 acattaatgttgatattttgaaaataatcacaagtttttaaaattttat 441  Q
    |||||||||||||||||||| |||||||||  | |||||||||||||||    
T  13699179 acattaatgttgatattttgtaaataatcatgaatttttaaaattttat 13699131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 28972070 - 28972012
Alignment:
Q  394 cattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||||||||||||||||||||||    |||  ||||||||||||| |||||||    
T  28972070 cattaatgttgatattttgaaaataatcatgtatttccaaaattttatcatatcgactt 28972012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 473
Target Start/End: Original strand, 40240218 - 40240296
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaa 473  Q
    ||||||| |||||||||||||||||| ||  ||||||| || ||||| || |||||||  |  ||||||||||||||||    
T  40240218 attaatgctgatattttgaaaataattacgcgtttttagaaatttattatatcgactttctcttatcaatacataaaaa 40240296  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 3739232 - 3739281
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||| |||| |||||||||| |||| ||||| ||||||||||||||    
T  3739232 attaatgtagatactttgaaaatagtcacgagtttctaaaattttatcat 3739281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 42499033 - 42498984
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||| |||||||||||||||| | || | ||||||||||||||||||    
T  42499033 attaatgatgatattttgaaaatagttacgaatttttaaaattttatcat 42498984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 28972257 - 28972197
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgac 450  Q
    |||||||| || ||||||||||||||||| |||  ||||||||| ||||||| || |||||    
T  28972257 actacatttatattgatattttgaaaatagtcaagagtttttaatattttattatatcgac 28972197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 436 - 490
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    ||||||||||||||||||||||||||||| ||||   |||| |||||||||||||    
T  436 actacattaatgttgatattttgaaaatagtcactgattttcaaaattttatcat 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 481
Target Start/End: Original strand, 265 - 355
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgacttggtgatatcaatacataaaaactttcttc 481  Q
    |||| ||||||||||| | |||||||||| |||| |||||| ||||||||||||| |||||||  | |||||  |||||||||  |||||||    
T  265 actatattaatgttga-agtttgaaaatagtcacgagttttcaaaattttatcatatcgactttctcatatcggtacataaaatttttcttc 355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 615 - 669
Alignment:
Q  390 actacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcat 444  Q
    |||||||||||||| |||||||||||||| |||  ||||| ||| ||||||||||    
T  615 actacattaatgtttatattttgaaaatagtcattagtttataatattttatcat 669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 1350 - 1294
Alignment:
Q  395 attaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgact 451  Q
    ||||||||| ||||| ||||||||||||| |||||| ||||||||||| | ||||||    
T  1350 attaatgtttatattatgaaaataatcactagttttcaaaattttatcgtctcgact 1294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 452
Target Start/End: Complemental strand, 51025 - 50962
Alignment:
Q  389 aactacattaatgttgatattttgaaaataatcacaagtttttaaaattttatcatttcgactt 452  Q
    |||||||||||| |||||||||| |||||| | || ||||||||||||| ||| || |||||||    
T  51025 aactacattaatattgatattttaaaaatagttacgagtttttaaaattatattatatcgactt 50962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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