View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16832_high_8 (Length: 448)

Name: NF16832_high_8
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16832_high_8
NF16832_high_8
[»] chr6 (10 HSPs)
chr6 (1-427)||(9170615-9171005)
chr6 (1-427)||(9159423-9159813)
chr6 (1-422)||(7025536-7025959)
chr6 (1-422)||(7012600-7013023)
chr6 (1-174)||(7029843-7030016)
chr6 (58-432)||(7041287-7041642)
chr6 (88-167)||(7046876-7046955)
chr6 (288-429)||(7046615-7046761)
chr6 (73-113)||(213063-213103)
chr6 (188-260)||(7046795-7046867)
[»] chr5 (3 HSPs)
chr5 (73-150)||(18571165-18571242)
chr5 (76-163)||(33541693-33541780)
chr5 (192-238)||(18571086-18571132)
[»] chr3 (34 HSPs)
chr3 (82-167)||(9343882-9343967)
chr3 (82-167)||(9448351-9448436)
chr3 (192-245)||(9617555-9617608)
chr3 (101-245)||(9494821-9494953)
chr3 (80-167)||(9695608-9695695)
chr3 (80-165)||(9395298-9395383)
chr3 (192-245)||(9425544-9425597)
chr3 (106-167)||(41985665-41985726)
chr3 (106-166)||(9655375-9655435)
chr3 (87-130)||(9613916-9613959)
chr3 (88-167)||(41980891-41980970)
chr3 (77-167)||(9329873-9329963)
chr3 (77-167)||(9336577-9336667)
chr3 (185-259)||(9402336-9402410)
chr3 (192-254)||(9407328-9407390)
chr3 (185-259)||(9420575-9420649)
chr3 (106-160)||(9626498-9626552)
chr3 (106-160)||(9646382-9646436)
chr3 (188-254)||(41985590-41985656)
chr3 (185-254)||(9432858-9432927)
chr3 (106-157)||(9340718-9340769)
chr3 (188-235)||(9646452-9646499)
chr3 (188-235)||(9655445-9655492)
chr3 (185-243)||(9329809-9329867)
chr3 (87-129)||(9348101-9348143)
chr3 (312-366)||(9432731-9432785)
chr3 (192-245)||(9614045-9614098)
chr3 (204-245)||(9626584-9626625)
chr3 (96-160)||(9352945-9353009)
chr3 (210-254)||(9397747-9397791)
chr3 (123-163)||(9407407-9407447)
chr3 (123-163)||(9416614-9416654)
chr3 (123-163)||(9441816-9441856)
chr3 (88-128)||(9485969-9486009)
[»] chr1 (14 HSPs)
chr1 (73-234)||(235195-235344)
chr1 (188-254)||(4439822-4439888)
chr1 (84-168)||(8814358-8814442)
chr1 (80-170)||(246901-246991)
chr1 (94-168)||(251400-251474)
chr1 (80-168)||(231617-231705)
chr1 (94-167)||(4428668-4428741)
chr1 (188-259)||(8814450-8814521)
chr1 (401-432)||(8814668-8814699)
chr1 (192-242)||(246841-246891)
chr1 (401-430)||(246660-246689)
chr1 (391-432)||(251677-251717)
chr1 (188-245)||(18991175-18991232)
chr1 (392-432)||(235004-235043)
[»] chr2 (2 HSPs)
chr2 (188-245)||(20694389-20694446)
chr2 (101-167)||(20694314-20694380)
[»] chr7 (3 HSPs)
chr7 (290-365)||(3695539-3695614)
chr7 (289-366)||(3679912-3679989)
chr7 (79-127)||(450102-450150)
[»] chr8 (1 HSPs)
chr8 (88-167)||(44688785-44688864)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 9171005 - 9170615
Alignment:
Q  1 agagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatcttaatgatcctggtcttaatgatcctgtaaggattgatttgtttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  9171005 agagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatcttaatgatcctg---------------taaggattgatttgtttaa 9170921  T
Q  101 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggggttggtatattcgttttctgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||    
T  9170920 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttgg------tatattcgttttctgtt 9170827  T
Q  201 tctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatctttgaatctatgtcttctgaatgtgagttatatgttttggact 300  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||               |||||||||||| ||| |||||||||||||||||||||    
T  9170826 tctgcttcagatttgtgtgtttcccaagggaattgtatcatctttga---------------atctatgtcttccgaacgtgagttatatgttttggact 9170742  T
Q  301 tggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacctcgaacatggatccgagcacgttaccaagtatgttg 400  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||    
T  9170741 tggatgatggtcagctttcgcttttttatgataatcctgaatattccaacttgctctggctacctcgaacatggatccgagctcggtaccaagtatgttg 9170642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 9159423 - 9159813
Alignment:
Q  1 agagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatcttaatgatcctggtcttaatgatcctgtaaggattgatttgtttaa 100  Q
    ||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||               |||||||||||||||||||    
T  9159423 agagcgagggagatttgttgttatcggaggcttatgattgtcttagtattgatcttaatgatcctg---------------taaggattgatttgtttaa 9159507  T
Q  101 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggggttggtatattcgttttctgtt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||    
T  9159508 gcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttgg------tatattcgttttctgtt 9159601  T
Q  201 tctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatctttgaatctatgtcttctgaatgtgagttatatgttttggact 300  Q
    |||||||||||||||||||||||||||||||||||| ||||||               |||||||||||||||| ||| |||||||||||||||||||||    
T  9159602 tctgcttcagatttgtgtgtttccaaagggaattgtatcatct---------------ttgaatctatgtcttccgaacgtgagttatatgttttggact 9159686  T
Q  301 tggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacctcgaacatggatccgagcacgttaccaagtatgttg 400  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9159687 tggatgatggtcagctttcgcttttttatgataatcctgaatattccaacttgttctggctacctcgaacatggatccgagctcgttaccaagtatgttg 9159786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 7025959 - 7025536
Alignment:
Q  1 agagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatcttaatgatcctggtcttaatgatcctgtaaggattgatttgtttaa 100  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||| || |||||||  | |||| | || |||||||  |||||||||||||||||||||    
T  7025959 agagcgagggggatttgttgttagcggatgtttataattgtctttttactgatctttgtaatcccgatcataatgattgtgtaaggattgatttgtttaa 7025860  T
Q  101 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggggttggtatattcgttttctgtt 200  Q
    |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||      ||||||| ||||||||||| |    
T  7025859 gcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttgggg------ttggtatgttcgttttctgct 7025766  T
Q  201 tctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatctttgaatc---tatgtc------ttctgaatgtgagttatatg 291  Q
    | ||||||||||||||||||| |||||||||||| |||||||||| || || |||||||||||||   || | |       ||||||||| ||  |||||    
T  7025765 tgtgcttcagatttgtgtgttgccaaagggaattctgtcatctttaataattatatctttgaatcacataggccacttgaatctgaatgtaaggaatatg 7025666  T
Q  292 ttttggacttggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacctcgaacatggatccgagcacgttacca 391  Q
    ||||||||||||||  ||| | || |||||||||||  ||| ||||||||||||||||||||||||||| ||||| |   ||||||||| | |||||| |    
T  7025665 ttttggacttggatctaggtcggcattcgcttttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatccgacctcgttacga 7025566  T
Q  392 agtatgttgatcttgcattgaaaggtttcta 422  Q
     ||| ||| |||||||||  |||||||||||    
T  7025565 tgtaagtt-atcttgcatcaaaaggtttcta 7025536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 7013023 - 7012600
Alignment:
Q  1 agagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatcttaatgatcctggtcttaatgatcctgtaaggattgatttgtttaa 100  Q
    |||||||||  |||||||||||||| || ||||||||||||||||||| |||||||   ||||||| |||||| ||||||||||| ||||||||||||||    
T  7013023 agagcgaggaggatttgttgttagcagatgtttatgattgtctttgtactgatcttttagatcctgatcttaaagatcctgtaagaattgatttgtttaa 7012924  T
Q  101 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggggttggtatattcgttttctgtt 200  Q
    |||||||||||||||||||||||||||||| || || |||||||| |||||| ||||||||||||||||||||      ||||||| |||||||||||      
T  7012923 gcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttgggg------ttggtatgttcgttttctgcc 7012830  T
Q  201 tctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatctttgaatc---tatgtcttctg------aatgtgagttatatg 291  Q
    | |||||| |||||||||||| |||||||||||| |||||||||| || || |||||||||||||   || | | | ||      ||||| ||  |||||    
T  7012829 tgtgcttcggatttgtgtgttgccaaagggaattctgtcatctttaataattatatctttgaatcatataggccatttggatttcaatgtaagcaatatg 7012730  T
Q  292 ttttggacttggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacctcgaacatggatccgagcacgttacca 391  Q
    |||||||||||||| |||| |  | ||||||||||| ||||  ||| ||||||||||||||||| |||| ||||  |   ||||||||| | ||||||||    
T  7012729 ttttggacttggatcaaggtcgacattcgcttttgtctgattgtcccgaatattccaacttgttatggccacctgcagagtggatccgacctcgttacca 7012630  T
Q  392 agtatgttgatcttgcattgaaaggtttcta 422  Q
    |||| ||| |||||||||  |||| ||||||    
T  7012629 agtaagtt-atcttgcatcaaaagttttcta 7012600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 7030016 - 7029843
Alignment:
Q  1 agagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatcttaatgatcctggtcttaatgatcctgtaaggattgatttgtttaa 100  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| || ||||||| || |||    || |||||||| |||||||||||||||||||||    
T  7030016 agagcgagggggatttgttgttagcggatgtttatgattgtctttttactgatctttataatctcaatcataatgatcgtgtaaggattgatttgtttaa 7029917  T
Q  101 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggt 174  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  7029916 gcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggggttggggt 7029843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 58 - 432
Target Start/End: Complemental strand, 7041642 - 7041287
Alignment:
Q  58 atgatcctggtcttaatgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggtttt 157  Q
    |||| |||| |||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  7041642 atgaccctgatcttaacgattctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggtttt 7041543  T
Q  158 gttcttggggttggggttggggttggtatattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatc 257  Q
    |||||            ||||    |||| |||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||  | ||  ||||    
T  7041542 gttct------------tgggagaagtatgttcgttctctgtttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagttatagtatc 7041455  T
Q  258 tttgaatctatgtcttctgaatgtgagttatatgttttggacttggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttct 357  Q
         |||| | || ||| ||| |||    | | |||||||||||||| |||| | || ||||| | | | |||| ||||||||||||||||||||||||    
T  7041454 -----atctgt-tcatctaaatctgaaagttgtattttggacttggatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttct 7041361  T
Q  358 ggctacctcgaacatggatccgagcacgttaccaagtatgttgatcttgcattgaaaggtttctaatgtgattgt 432  Q
    ||| ||||| ||  |||||| ||   ||||| |||||||||| ||||| ||  |||| |||||||||||||||||    
T  7041360 ggccacctccaaagtggatctgatttcgttatcaagtatgtt-atcttccagcgaaaagtttctaatgtgattgt 7041287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 7046955 - 7046876
Alignment:
Q  88 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggg 7046876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 429
Target Start/End: Complemental strand, 7046761 - 7046615
Alignment:
Q  288 tatgttttggacttggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacctcgaacatggatccgagcacgtt 387  Q
    |||||||||||||||||| ||||   |||| |||||||||  |||  ||||||||||||||||||||| |||| ||||| ||  ||||||  ||  ||||    
T  7046761 tatgttttggacttggatcaaggttggcttccgcttttgtgcgattctcctgaatattccaacttgttttggccacctccaaagtggatctaagttcgtt 7046662  T
Q  388 accaagtatgt-----tgatcttgcattgaaaggtttctaatgtgat 429  Q
    |||||||||||     | |||||||||||||||||||||||||||||    
T  7046661 accaagtatgttattgttatcttgcattgaaaggtttctaatgtgat 7046615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 213063 - 213103
Alignment:
Q  73 atgatcctgtaaggattgatttgtttaagcttaatgagaag 113  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  213063 atgatcctgtaaggattcatgtgtttaagcttaatgagaag 213103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 7046867 - 7046795
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatcttt 260  Q
    ||||||||||| ||||  ||||||||||| |||| |||||||||||||||| ||| ||  || ||||||||||    
T  7046867 ttcgttttctgcttctttttcagatttgtatgttgccaaagggaattgtgtgatcattagtgctgatatcttt 7046795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 18571242 - 18571165
Alignment:
Q  73 atgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggata 150  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  18571242 atgatcccgtaaggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 33541780 - 33541693
Alignment:
Q  76 atcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 163  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||| ||||||||| ||||  |||||||||||    
T  33541780 atcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttctt 33541693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 18571132 - 18571086
Alignment:
Q  192 ttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgt 238  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||    
T  18571132 ttttctatttctgcttcggatttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 9343967 - 9343882
Alignment:
Q  82 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    ||||| ||||| ||||||||||| |||||| |||||||||||||||||| ||||| | |||||||||||| |||||||||||||||    
T  9343967 taagggttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttgggg 9343882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 9448436 - 9448351
Alignment:
Q  82 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    ||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||| | |||||||||||| |||||||||||||||    
T  9448436 taagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttgggg 9448351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 9617555 - 9617608
Alignment:
Q  192 ttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 245  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9617555 ttttctgcttctgcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 9617608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 245
Target Start/End: Original strand, 9494821 - 9494953
Alignment:
Q  101 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggggttggtatattcgttttctgtt 200  Q
    |||| |||||||||||| ||  |||||||| || | |||||||||||||||||||||||||||||||   ||            || ||||||||||| |    
T  9494821 gcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatgg------------atgttcgttttctgct 9494908  T
Q  201 tctgcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 245  Q
    |||||||| |||||||| |||||||||||||||||||||||||||    
T  9494909 tctgcttctgatttgtgcgtttccaaagggaattgtgtcatcttt 9494953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 9695608 - 9695695
Alignment:
Q  80 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    |||||| |||||| | || | |||| |||||||||||||||||||||| || || || | ||||||||||||||||||||| ||||||    
T  9695608 tgtaagtattgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggg 9695695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 9395383 - 9395298
Alignment:
Q  80 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgg 165  Q
    ||||||||||||| |||||| |||| |||||||| |||| ||||||||||| || || | |||||| |||  ||||||||||||||    
T  9395383 tgtaaggattgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 9425597 - 9425544
Alignment:
Q  192 ttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 245  Q
    ||||||| ||| ||||| |||||||||||| |||||||||||||||||||||||    
T  9425597 ttttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcatcttt 9425544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 41985726 - 41985665
Alignment:
Q  106 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  41985726 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 41985665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 9655375 - 9655435
Alignment:
Q  106 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggg 166  Q
    |||||||||||||||| |||||||| || | || ||||||||||||||||||||| |||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttggg 9655435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 9613916 - 9613959
Alignment:
Q  87 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaa 130  Q
    |||||||| ||||||||| |||||||||||||||||||||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaa 9613959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 41980970 - 41980891
Alignment:
Q  88 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    ||||| |||||| ||||  | |||| |||||||| ||||| || || ||||||||||||||||| |||||||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttgggg 41980891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 9329963 - 9329873
Alignment:
Q  77 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    ||||||| |||||||| |||||| |||| ||||||| ||||| | |||||| || ||  ||| |||||| |||| ||||||||||||||||    
T  9329963 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttgggg 9329873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 9336667 - 9336577
Alignment:
Q  77 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    ||||||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9336667 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 9336577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 9402410 - 9402336
Alignment:
Q  185 atattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatctt 259  Q
    |||||| |||||||  ||||| ||||||||||||||| | |||||||||||| ||||||||  |||||| |||||    
T  9402410 atattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatgaaatctt 9402336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 9407390 - 9407328
Alignment:
Q  192 ttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgat 254  Q
    ||||||| ||| ||||| |||||||||||| ||||||||||||||||| |||||  |||||||    
T  9407390 ttttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatgat 9407328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 9420649 - 9420575
Alignment:
Q  185 atattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatctt 259  Q
    |||||| |||||||  ||||| ||||||||||||||| | |||||||||||| ||||||||  |||||| |||||    
T  9420649 atattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatgaaatctt 9420575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 9626498 - 9626552
Alignment:
Q  106 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgtt 160  Q
    |||||||||||||||| |||||||| || | || |||||||||||||||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgtt 9626552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 9646382 - 9646436
Alignment:
Q  106 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgtt 160  Q
    |||||||||||||||| |||||||| || | || |||||||||||||||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtt 9646436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 41985656 - 41985590
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgat 254  Q
    ||||||||||| ||||||||| ||||||| ||||  |||||| |||||||||||||||  |||||||    
T  41985656 ttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgat 41985590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 9432927 - 9432858
Alignment:
Q  185 atattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgat 254  Q
    |||||| ||||||| ||| || || ||||||||||||||| ||||||||||| ||||||||  |||||||    
T  9432927 atattccttttctgcttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgat 9432858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 9340769 - 9340718
Alignment:
Q  106 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggtttt 157  Q
    ||||||||||||||||||||||||| || | || ||| ||||||||||||||    
T  9340769 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttt 9340718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 9646452 - 9646499
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattg 235  Q
    |||||||||||  || ||||| ||||||||||||||||||||||||||    
T  9646452 ttcgttttctgcatcagcttcggatttgtgtgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 9655445 - 9655492
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattg 235  Q
    |||||||||||  || ||||| ||||||||||||||||||||||||||    
T  9655445 ttcgttttctgcatcagcttcggatttgtgtgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 9329867 - 9329809
Alignment:
Q  185 atattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatct 243  Q
    |||||||||||||| ||||||||| || ||| || || |||| ||||||||||||||||    
T  9329867 atattcgttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatct 9329809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 9348143 - 9348101
Alignment:
Q  87 attgatttgtttaagcttaatgagaaggagaagaagtgggtga 129  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||    
T  9348143 attgatttttttaaacttgatgagaaggagaagaagtgggtga 9348101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 9432785 - 9432731
Alignment:
Q  312 cagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacctc 366  Q
    ||||||| || ||||| |||| |||||||||||| |||||||||||||| |||||    
T  9432785 cagctttggcctttgtctgattatcctgaatattacaacttgttctggccacctc 9432731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 9614045 - 9614098
Alignment:
Q  192 ttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 245  Q
    ||||||| ||||||||||||| ||||| || ||||||| |||||||| ||||||    
T  9614045 ttttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatcttt 9614098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 9626584 - 9626625
Alignment:
Q  204 gcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 245  Q
    ||||| ||||||||||||||||||||||||||  ||||||||    
T  9626584 gcttcggatttgtgtgtttccaaagggaattgcatcatcttt 9626625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 9353009 - 9352945
Alignment:
Q  96 tttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgtt 160  Q
    ||||||||| |||||| |||||||||||||||||| || |  |  ||||||| ||||||||||||    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtt 9352945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 9397791 - 9397747
Alignment:
Q  210 gatttgtgtgtttccaaagggaattgtgtcatctttgatgatgat 254  Q
    |||||||||||| ||||||||||||||||| |||||  |||||||    
T  9397791 gatttgtgtgttgccaaagggaattgtgtcgtctttattgatgat 9397747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 9407447 - 9407407
Alignment:
Q  123 tgggtgaaattaacgagtttaggggatagggttttgttctt 163  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  9407447 tgggtgaagttgatgagtttaggggatagggttttgttctt 9407407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 9416654 - 9416614
Alignment:
Q  123 tgggtgaaattaacgagtttaggggatagggttttgttctt 163  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  9416654 tgggtgaagttgacgagtttaggggatagggtgttgttctt 9416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 9441816 - 9441856
Alignment:
Q  123 tgggtgaaattaacgagtttaggggatagggttttgttctt 163  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  9441816 tgggtgaagttgatgagtttaggggatagggttttgttctt 9441856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 9485969 - 9486009
Alignment:
Q  88 ttgatttgtttaagcttaatgagaaggagaagaagtgggtg 128  Q
    ||||| |||||| |||| |||||||||||||||||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtg 9486009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 235344 - 235195
Alignment:
Q  73 atgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggg 172  Q
    |||||| || ||||||| |  |||||||||||||||| |||||||||||||||||||| ||  | | |||||||||||| ||||| ||||||||          
T  235344 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggg------ 235251  T
Q  173 gttggggttggtatattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaatt 234  Q
          |||| ||| ||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  235250 ------gttgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 4439888 - 4439822
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgat 254  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||  |||||||    
T  4439888 ttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattgatgat 4439822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 8814358 - 8814442
Alignment:
Q  84 aggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggt 168  Q
    ||||||||  ||||||||||||| || |||||||||||||||||||| ||  ||| |||||||||||| |||||||| |||||||    
T  8814358 aggattgacatgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggt 8814442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 246991 - 246901
Alignment:
Q  80 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttg 170  Q
    |||||||||||| ||||||||||||||||  | ||||||||| |||||||| ||  | | |||||| ||||  ||||||||||||||||||    
T  246991 tgtaaggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttg 246901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 251400 - 251474
Alignment:
Q  94 tgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggt 168  Q
    |||||||||||||||| ||||| ||||||||||| || ||  ||| | |||||||||| ||||||||||||||||    
T  251400 tgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggt 251474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 231705 - 231617
Alignment:
Q  80 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggt 168  Q
    ||||||||| ||| |||||||||| ||||  ||||||| |||||||||||| ||  | | |||||||||||  ||||||||||||||||    
T  231705 tgtaaggatagatgtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggt 231617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 4428741 - 4428668
Alignment:
Q  94 tgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    |||||| |||| ||||||||| |   || ||||||||||| |||||||| ||||||||||||||||| ||||||    
T  4428741 tgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttgggg 4428668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 8814450 - 8814521
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttgatgatgatatctt 259  Q
    ||| ||||||| ||||||||  |||||||||||| |||||||||||||||| ||| ||   |||||||||||    
T  8814450 ttcattttctgcttctgctttggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatctt 8814521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 432
Target Start/End: Original strand, 8814668 - 8814699
Alignment:
Q  401 atcttgcattgaaaggtttctaatgtgattgt 432  Q
    ||||||||||||||||||||||||||||||||    
T  8814668 atcttgcattgaaaggtttctaatgtgattgt 8814699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 246891 - 246841
Alignment:
Q  192 ttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatc 242  Q
    ||||||| ||||||||  ||||||||||||  |||||||||||||||||||    
T  246891 ttttctgcttctgctttggatttgtgtgttcacaaagggaattgtgtcatc 246841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 430
Target Start/End: Complemental strand, 246689 - 246660
Alignment:
Q  401 atcttgcattgaaaggtttctaatgtgatt 430  Q
    ||||||||||||||||||||||||||||||    
T  246689 atcttgcattgaaaggtttctaatgtgatt 246660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 251677 - 251717
Alignment:
Q  391 aagtatgttgatcttgcattgaaaggtttctaatgtgattgt 432  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  251677 aagtatgtt-atcttgcattgaaaggtttctaatgtcattgt 251717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 18991232 - 18991175
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 245  Q
    ||||||||||| ||||||||| ||||| | ||||  |||||||||||||||| |||||    
T  18991232 ttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtcttt 18991175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 235043 - 235004
Alignment:
Q  392 agtatgttgatcttgcattgaaaggtttctaatgtgattgt 432  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  235043 agtatgtt-atcttgcattgaaaggtttctaatctgattgt 235004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 20694389 - 20694446
Alignment:
Q  188 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtgtcatcttt 245  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||    
T  20694389 ttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatcttt 20694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 20694314 - 20694380
Alignment:
Q  101 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    |||| |||| ||||||||||| |||||||  || || ||||| ||||||||||||||||| ||||||    
T  20694314 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 20694380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 3695614 - 3695539
Alignment:
Q  290 tgttttggacttggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacct 365  Q
    ||||||| |||||||||||||   | |||||||| ||| | || ||||||||||||||||||||||||||| ||||    
T  3695614 tgttttgtacttggatgaaggtaggatttcgcttatgtctaatgatcctgaatattccaacttgttctggccacct 3695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 366
Target Start/End: Complemental strand, 3679989 - 3679912
Alignment:
Q  289 atgttttggacttggatgaaggccagctttcgcttttgtatgataatcctgaatattccaacttgttctggctacctc 366  Q
    |||||||| ||||||||||||| | | |||||||| ||| |||| || ||||||||| || ||| ||||||| |||||    
T  3679989 atgttttgcacttggatgaaggtcggatttcgcttatgtctgatgatgctgaatatttcagcttattctggccacctc 3679912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 450102 - 450150
Alignment:
Q  79 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggt 127  Q
    ||||| |||||||| |||||| |||| ||||||||||||| ||||||||    
T  450102 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggt 450150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 44688785 - 44688864
Alignment:
Q  88 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 167  Q
    ||||| |||| | ||| ||||||||| | ||||| ||||| || ||||||||||||||| ||||  ||||||||||||||    
T  44688785 ttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttgggg 44688864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University