View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16832_high_9 (Length: 446)

Name: NF16832_high_9
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16832_high_9
NF16832_high_9
[»] chr2 (2 HSPs)
chr2 (34-434)||(37302529-37302928)
chr2 (300-401)||(37302321-37302423)
[»] chr4 (1 HSPs)
chr4 (79-251)||(16827855-16828027)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 34 - 434
Target Start/End: Complemental strand, 37302928 - 37302529
Alignment:
Q  34 ctctacgtagcttaactataagttaannnnnnnnncctaggttatatgggttgagcatgttgaagtggatgatagaggtgttcataatctatacaagcag 133  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37302928 ctctacgtagcttaactataagttaatttttttt-cctaggttatatgggttgagcatgttgaagtggatgatagaggtgttcataatctatacaagcag 37302830  T
Q  134 cttgttagttctggacatgcatttggtgcaaaacgttggattgcaaccctagatcgacaatgtgaaagacttgctagtgccatggcaacaaacattccca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37302829 cttgttagttctggacatgcatttggtgcaaaacgttggattgcaaccctagatcgacaatgtgaaagacttgctagtgccatggcaacaaacattccca 37302730  T
Q  234 cggtcgatgttggcggtatcaatacaaaaacacatctctttgtcattttgtttaaacannnnnnnaatcccaaaaaattcttaaaactcgattccaagtc 333  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  37302729 cggtcgatgttggcggtatcaatacaaaaacacagctctttgtcattttgtttaaacatttttttcatcccaaaaaattcttaaaactcgattccaagtc 37302630  T
Q  334 tagtctctctctaaaaaattacgagttttcatcctcgaattttttaaatacactgcttctagtccgatttcttctatgaacatgttatttatcgtcattt 433  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  37302629 tagtctctctctaaaaaattacgagttttcatcctcgaatttcttaaatacattgcttctagtccgatttcttctatgaacatgtcatttatcgtcattt 37302530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 37302423 - 37302321
Alignment:
Q  300 atcccaaaaaattcttaaaact-cgattccaagtctagtctctctctaaaaaattacgagttttcatcctcgaattttttaaatacactgcttctagtcc 398  Q
    |||||||||||||||||||| | ||||||||| | ||||||  ||||| |||||||||| | ||||||||| |||||| |||||||  || |||||||||    
T  37302423 atcccaaaaaattcttaaaaattcgattccaattttagtctaactctagaaaattacgaatgttcatcctcaaattttataaatactttgtttctagtcc 37302324  T
Q  399 gat 401  Q
    |||    
T  37302323 gat 37302321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 16827855 - 16828027
Alignment:
Q  79 atgggttgagcatgttgaagtggatgatagaggtgttcataatctatacaagcagcttgttagttctggacatgcatttggtgcaaaacgttggattgca 178  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||   ||||| ||||||||||||||||||||||| ||||     
T  16827855 atgggttgagcatgtagaagtggatgagaggggtgttcataatctatacaagcaacttgttaacactggagatgcatttggtgcaaaacgttgggttgcg 16827954  T
Q  179 accctagatcgacaatgtgaaagacttgctagtgccatggcaacaaacattcccacggtcgatgttggcggta 251  Q
    ||  ||||||||||||||||||||||||||||  |||||||||||||||||||||| || |||||||| ||||    
T  16827955 actttagatcgacaatgtgaaagacttgctagctccatggcaacaaacattcccaccgttgatgttgggggta 16828027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University