View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16832_low_1 (Length: 898)

Name: NF16832_low_1
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16832_low_1
NF16832_low_1
[»] chr1 (5 HSPs)
chr1 (325-884)||(17517096-17517665)
chr1 (10-203)||(17516734-17516926)
chr1 (252-331)||(17516956-17517035)
chr1 (249-331)||(15774290-15774371)
chr1 (249-318)||(11405506-11405573)
[»] chr4 (1 HSPs)
chr4 (249-318)||(33076580-33076648)
[»] chr2 (2 HSPs)
chr2 (252-331)||(11837025-11837103)
chr2 (249-318)||(580761-580828)
[»] chr8 (4 HSPs)
chr8 (249-316)||(24074558-24074623)
chr8 (249-318)||(1588817-1588884)
chr8 (249-318)||(13702330-13702397)
chr8 (280-317)||(44070375-44070412)
[»] chr3 (2 HSPs)
chr3 (249-324)||(50724411-50724484)
chr3 (249-324)||(50788364-50788437)


Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 325 - 884
Target Start/End: Original strand, 17517096 - 17517665
Alignment:
Q  325 tacatattaatcatgcacaaagtcaaaaagacaagacnnnnnnnnnntatttgatatgtaaaagcatgtgtgattagtgtgaggaacattatatggtgcg 424  Q
    |||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17517096 tacataataatcatgcacaaagtcaaaaagacaagacaaaaaaaaaatatttgatatgtaaaagcatgtgtgattagtgtgaggaacattatatggtgcg 17517195  T
Q  425 catggcatg----------agaaagagcatcatggcatcatatatatagacaccaagaaaatggtttatatgaatccaatagatttaagcacaagttgta 514  Q
    |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17517196 catggcatggcatggcatgagaaagagcatcatggcatcatatatatagacaccaagaaaatggtttatatgaatccaatagatttaagcacaagttgca 17517295  T
Q  515 atatattttcatacattatataggataggataggagtgtgagtgtcttgttttcaaagagtgtactcttgaacaaaataaggtgagaacattgtggttcc 614  Q
    ||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17517296 atacattttcatacattctatat-ataggataggagtgtgagtgtcttgttttcaaagagtgcactcttgaacaaaataaggtgagaacattgtggttcc 17517394  T
Q  615 tttatattttgcactatgttctacttattataatcacattcatcattcatgtgttct-aacagtactttattcattacttcattgtttgagcataatttg 713  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||    
T  17517395 tttatattttgcattatgttttacttattataatcacattcatcattcatgtgttcttaacagtactttattcatcactttattgtttgagcatcatttg 17517494  T
Q  714 taagtgaaatttgggctcctttttcaatgttttatatttctgtcacgacattgctcgtgtcgcgattcttgatattgtggagaatagcagttaactgtag 813  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17517495 taagtgaaatttgggctcctttttcaacgttttatatttctgtcacgacattgctcgtgtcgcgattcttgatattgtggagaatagcagttaactgtag 17517594  T
Q  814 tgtcaatagcggtcacattgcagtcgtacacataaaaaattctggttgcctagatcgcggttgcgaagtgt 884  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17517595 tgtcaatagtggtcacattgcagtcgtacacataaaaaattctggttgcctagatcgcggttgcgaagtgt 17517665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 17516734 - 17516926
Alignment:
Q  10 attatactaactactaatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516734 attatactaactactaatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggct 17516833  T
Q  110 ttctgaattctgcataccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaacttcaagatgaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17516834 ttctgaattctgcataccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaactt-aagatgaa 17516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 17516956 - 17517035
Alignment:
Q  252 aggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 331  Q
    |||||| |||||||||||||| | ||||||||||| |||||||||  |||||| |||||||||| |||||||||||||||    
T  17516956 aggtagtttagtggctagaaatttatctttataagatgaataagcggggtgtctgaggttcgaatccgaaccctacatat 17517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 15774290 - 15774371
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 331  Q
    ||||||||||||||||||||| || ||| | ||||||||||||||||   |||||||| |||||||| ||||| ||||||||||    
T  15774290 gtcaggtagcttagtggctag-aattca-ccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctacatat 15774371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 11405573 - 11405506
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||||||||||||||||  ||| ||| ||||||||||||||   |||||||| |||||||||||    
T  11405573 gtcaggtagcttagtggctagaat-tcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 11405506  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 33076648 - 33076580
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||| ||  |||||||| ||||||||||||| | |||||||| |||||||||||    
T  33076648 gtcaggtagcatagtggctataat-tcatctttttaaggtgaataagtagggtgtccggggttcgaaccc 33076580  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 11837103 - 11837025
Alignment:
Q  252 aggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 331  Q
    ||||||| ||||||||||||  ||| ||||||||||||||||||  ||||||||| |||||||| ||||| ||||||||||    
T  11837103 aggtagcctagtggctagaat-tca-ctttataaggtgaataagtgaggtgtccggggttcgaaccccgacccctacatat 11837025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 580761 - 580828
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||  ||||||| ||||||||||||||   |||||||| |||||||||||    
T  580761 gtcaggtagcctagtggctagaat-tcatctt-ataaggtgaataagtggggtgtccggggttcgaaccc 580828  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 24074623 - 24074558
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaac 316  Q
    |||||||||| ||||||||||||  ||| ||| ||||||||||||||  |||||||||||||||||||    
T  24074623 gtcaggtagcctagtggctagaat-tcacctt-ataaggtgaataagtgaggtgtccgaggttcgaac 24074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 1588884 - 1588817
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||| ||| |||| ||| |||||||||   ||||||||||||||||||||    
T  1588884 gtcaggtagcatagtggctagaaattca-cttt-taaagtgaataagtggggtgtccgaggttcgaaccc 1588817  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 13702330 - 13702397
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    ||||| |||||||||||||||||  ||| ||| ||||||||||||||  ||||||| |||||||||||||    
T  13702330 gtcagctagcttagtggctagaat-tcacctt-ataaggtgaataagtgaggtgtctgaggttcgaaccc 13702397  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 44070375 - 44070412
Alignment:
Q  280 ttataaggtgaataagcaaggtgtccgaggttcgaacc 317  Q
    |||||||||||||||| | |||||||||||||||||||    
T  44070375 ttataaggtgaataagtagggtgtccgaggttcgaacc 44070412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 50724484 - 50724411
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 324  Q
    |||||||||| ||||||||||||  ||| |||| |||||||||||||   |||||||||||||||||||| |||||    
T  50724484 gtcaggtagcctagtggctagaat-tca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccccaaccc 50724411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 50788364 - 50788437
Alignment:
Q  249 gtcaggtagcttagtggctagaaaatcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 324  Q
    |||||||||| ||||||||||||  ||| |||| |||||||||||||   |||||||||||||||||||| |||||    
T  50788364 gtcaggtagcctagtggctagaat-tca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccccaaccc 50788437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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