View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_12 (Length: 436)
Name: NF16832_low_12
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 109 - 403
Target Start/End: Original strand, 2282388 - 2282680
Alignment:
| Q |
109 |
actttggagcctggaggtgttttcattttataattctttcaagagcatttcaaaatgttaaaagttgattggttatcattttgaaaaaataattttatta |
208 |
Q |
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| T |
2282388 |
actttggagcctggaggtgttttcattttataattttttca-gagtatttcaaaatgttaaaagttgattggttatcatata-aaaaaataattttatta |
2282485 |
T |
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| Q |
209 |
aagcacatttttcattttaaaggaatttatcaagcgaactattggctaaaaattcacttcttaaaatgaataaatgaggtgttcgagactcaaacctcaa |
308 |
Q |
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| T |
2282486 |
aagcacatttttcattttaaagcaatttgtcaagtgaactattggctagaaattcacttcttaaaataaataagtgaggtgttcgagattcgaacctcaa |
2282585 |
T |
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| Q |
309 |
cttctacatatatgttaagcaatatccctaagaacatgtaatctcataggaacttaaccattttttattatatgaaaattatgaatacaacccct |
403 |
Q |
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| T |
2282586 |
cctctacatatatgttaagcaatatccctatgaacatgtaatctcatatgaacttaaccattttttattatatgaaaattatgaatacaacccct |
2282680 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 1861465 - 1861421
Alignment:
| Q |
251 |
tggctaaaaattcacttcttaaaatgaataaatgaggtgttcgag |
295 |
Q |
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| T |
1861465 |
tggctaaaaattcacctcttaaaatgaataagtgaggtgttcgag |
1861421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 36824397 - 36824334
Alignment:
| Q |
257 |
aaaattcacttcttaaaatgaataaatgaggtgttcgagactcaaacctcaacttctacatata |
320 |
Q |
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| T |
36824397 |
aaaattcactttttaagatgaataaatgaggtgtctgaggttcgaacttcaacttctacatata |
36824334 |
T |
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